EY757928

Overview
NameEY757928
Unique NameEY757928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY757928_ssr51 microsatellite EY757928_ssr51:51..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9552 contig Csv1_Contig9552:92..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 4.787e-63
Identity = 116/139 (83.45%), Postives = 124/139 (89.21%), Query Frame = 3
Query:  327 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSP 743
            E+LLFEALR+GL+EEMDRDP V VMGEDVGHYGGSYKVTKG A++YGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGMNMGFLLLAFNQI+NN GMLHYTSGG FTIPIVIRGPGG GRQLGAEHS  L   F   P
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVP 141          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.787e-63
Identity = 117/139 (84.17%), Postives = 123/139 (88.49%), Query Frame = 3
Query:  327 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSP 743
            E+LLFEALREGL+EEMDRDP V VMGEDVGHYGGSYKVTKG A+KYGDLR+LDTPIAENSFTGM IGAAMTGLRP+VEGMNMGFLLLAFNQI+NN GMLHYTSG  FTIPIVIRGPGG GRQLGAEHS  L   F   P
Sbjct:    3 EMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVP 141          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.352e-62
Identity = 114/139 (82.01%), Postives = 120/139 (86.33%), Query Frame = 3
Query:  327 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSP 743
            E+LLFEALR+ L+EEM RDP V VMGEDVGHYGGSYKVTKG  +KYGDLR+LDTPIAENSFTGM IGAAMTGLRPIVEGMNMGFLLLAFNQI+NN GMLHYTSGG F IPIVIRGPGG GRQLGAEHS  L   F   P
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSVP 141          

HSP 2 Score: 23.483 bits (49), Expect = 9.352e-62
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  817 PSILFEHVLLLHLKE 861
            P I FEHVLL +L E
Sbjct:  167 PVIFFEHVLLYNLNE 181          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.718e-58
Identity = 106/139 (76.26%), Postives = 120/139 (86.33%), Query Frame = 3
Query:  327 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSP 743
            E LL+EAL EG+ EE++RDP V V+GED+GHYGGSYKVTKGL +KYG+LR+LDTPIAENSFTG+ IGAAMTGLRPI+EGMNMGFLLLAFNQI+NN GMLHYTSGG FT P+V+RGPGG GRQLGAEHS  L   F   P
Sbjct:    3 EKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVP 141          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.142e-56
Identity = 107/142 (75.35%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  327 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSPEFK 752
            ++ +F+ALR   +EEM +DP VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG FT+P+VIRGPGG GRQLGAEHS  L   F   P  K
Sbjct:    3 KIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLK 144          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.402e-56
Identity = 106/142 (74.65%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  327 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSPEFK 752
            ++ +F+ALR   +EEM++D  VCV+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG FT+P+VIRGPGG GRQLGAEHS  L   F   P  K
Sbjct:    3 KVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLK 144          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.263e-55
Identity = 104/143 (72.73%), Postives = 118/143 (82.52%), Query Frame = 3
Query:  324 HELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSPEFK 752
            H+L ++EALRE ++EEM RD  V V+GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSFTGM IGAAMTGL+P+VEGMN+ FLLLAFNQISNN GMLHYTSGG ++IP+VIRGPGG G+QL AEHS  +   F   P  K
Sbjct:    3 HKLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIPLVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLK 145          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.673e-55
Identity = 107/142 (75.35%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  327 ELLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSPEFK 752
            E+L+F+ALRE  +EEM  D  V ++GEDVGHYGGSYKVTK L  KYGDLRVLDTPIAENSF GM IGAA+TGLRPIVEGMNM FLLLAFNQISNN GML YTSGG F IPIVIRGPGG GRQLGAEHS  L   F   P  K
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIPIVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLK 144          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.840e-53
Identity = 101/138 (73.19%), Postives = 112/138 (81.16%), Query Frame = 3
Query:  330 LLLFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSP 743
            + L+EALR  ++EEM +D +V ++GEDVGHYGGSYKVTK L  KYGDLRVLD PIAENSFTGM IGAAMTGLRPIVEGMNMGF+LLAFNQISNN  ML YTSGG F IP+VIRGPGG G+QL AEHS  L   F   P
Sbjct:    4 MFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNIPVVIRGPGGIGKQLAAEHSQRLESCFQSIP 141          

HSP 2 Score: 20.7866 bits (42), Expect = 1.840e-53
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  814 EPSILFEHVLLLHLK 858
            +P +  EHVLL +LK
Sbjct:  166 KPILFLEHVLLYNLK 180          
BLAST of EY757928 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.117e-46
Identity = 91/136 (66.91%), Postives = 106/136 (77.94%), Query Frame = 3
Query:  336 LFEALREGLEEEMDRDPHVCVMGEDVGHYGGSYKVTKGLADKYGDLRVLDTPIAENSFTGMGIGAAMTGLRPIVEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPIVIRGPGGSGRQLGAEHSNALSHIFNQSP 743
            LFEAL   ++EEM R+  V ++GED+GHYGGSYKVT+ L  KYG+ RV+DTPIAENSF G  IGAAMTGL  +VEGMNMGF+LLAF+QISNN GML  TSGG + IPIV+RGPGG G+QLGAEHS  L   F   P
Sbjct:    6 LFEALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIPIVLRGPGGVGKQLGAEHSQRLECYFQSVP 141          
The following BLAST results are available for this feature:
BLAST of EY757928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_ZYGCR4.787e-6383.45Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAPU4.787e-6384.17Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL9.352e-6282.01Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU2.718e-5876.26Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.142e-5675.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU7.402e-5674.65Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME1.263e-5572.73Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL3.673e-5575.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA1.840e-5373.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI3.117e-4666.91Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-B11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757928 ID=EY757928; Name=EY757928; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGTTCTTTCAGTTAATAAGAAAAACCTCTCGCAGTTCTTCA
AATCGAATCGAATCGAATCCAATGGCTGCAATTTTCCTGGGCGTGGGAGC
TGCAACGGCTTTATCACCGTCCAATTGCTTCGATTCTAAGAAGTTCCAGC
TCTCAACTCGCAGATCTCTCTCAGGACGGAAACCGTGGTTCTTAGTTGTC
AGATCTGATGGAAGCGTCAACTTAGGCTCGAATCAAAGATCCCGGAGGAC
TCAACAGTTGATCACTAATGCAGTTGCAACGAAGGCTGATTCGGCAGCTT
CTACTTCGGCATCAAAGCAAGGGCACGAACTTTTACTTTTTGAAGCTCTA
CGAGAAGGCTTGGAAGAAGAAATGGACAGAGATCCACATGTATGTGTCAT
GGGTGAAGATGTTGGTCACTATGGGGGTTCGTACAAAGTGACCAAAGGCC
TGGCTGATAAGTATGGGGATCTCAGGGTTCTTGACACCCCTATTGCTGAG
AACTCTTTCACTGGTATGGGCATTGGGGCTGCCATGACTGGCTTGAGGCC
AATTGTTGAAGGAATGAACATGGGATTTCTTCTTTTAGCTTTCAACCAGA
TCTCCAACAACTGTGGTATGCTCCACTATACTTCTGGTGGGCAGTTTACC
ATACCAATAGTTATCCGTGGACCTGGTGGGAGTGGCCGACAACTTGGAGC
TGAGCATTCCAACGCCTTGAGTCATATTTTCAATCAATCCCCGGAATTCA
AATGGTGGCATGCTCGACCCCATANCATGNCNAGGNCTTGATGAANGCTG
CAATCCGAAGTGAGAACCCAGTATACTTTTCGAGCATGTGTTGCTTTTAC
ACCTCAAGGAAAGATTCAGANTGAGATACATTTGTA
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