EY757925

Overview
NameEY757925
Unique NameEY757925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY757925_ssr669 microsatellite EY757925_ssr669:669..680. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY757925 vs. ExPASy Swiss-Prot
Match: BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 57/199 (28.64%), Postives = 87/199 (43.72%), Query Frame = 2
Query:    5 EVIKSLTVQLKKMAEKSPEG----------ASPSFTSGSTARHP--------------------SGVRTTYSTESHKXXXXXXXXXXXXXXXQQNLSHGTKVQTERKERMVQAESGVYITLSTLPGGGNEVKRVRFSRKHFTEQEAEKWWSENGAKICERYNIRSSH*WPVLPYFP-----CKKADL--TDTINADLLP 490
            + IK+LT Q+K MA K+             +S S  +G+   HP                    SG   T S  +                 ++  +       E KE + Q E GV IT  +LP GGN++KR+RFSR+ F + +A++WW+EN  K+ E YN++  +    LP  P       K D+  T  +N++ LP
Sbjct:   44 QAIKALTAQIKDMALKASGAYRHCKPCAGSSSSSPAAGARRHHPYHAYADSGSDRFHYAYRRAGSGGDATPSVSARTDFLAGDEEEEEEEEEEEGTTADGSEDDEAKEWVAQVEPGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQRFNQQTPLPTTPKSEDESLKEDIPATPPLNSERLP 242          
BLAST of EY757925 vs. ExPASy Swiss-Prot
Match: BRXL1_ARATH (Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 52/163 (31.90%), Postives = 80/163 (49.08%), Query Frame = 2
Query:    5 EVIKSLTVQLKKMAEK----------SPEGAS------PSF-TSGSTARHPSGVRTTYSTES--------HKXXXXXXXXXXXXXXXQQNLSHGT----KVQTERKERMVQAESGVYITLSTLPGGGNEVKRVRFSRKHFTEQEAEKWWSENGAKICERYNIR 406
            E +KSLT Q+K MA K          +P  +S      P F T+  +  +P    +T ST +        H+               ++++S  +        E KE M Q E GV+IT  +LP GGN++KR+RFSR+ F + +A++WW EN  +I E YN++
Sbjct:   32 EAVKSLTTQIKDMASKFSGSHKQSKPTPGSSSSNLRKFPDFDTASESVPYPYPGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYGGERESISAQSCDVVLEDDEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVFDKWQAQRWWGENYDRIVELYNVQ 194          
BLAST of EY757925 vs. ExPASy Swiss-Prot
Match: BRX_ARATH (Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  233 KERMVQAESGVYITLSTLPGGGNEVKRVRFSRKHFTEQEAEKWWSENGAKICERYNIR 406
            KE M Q E GV+IT ++LP GGN++KR+RFSR+ F + +A++WW EN  KI E YN++
Sbjct:  139 KEWMAQVEPGVHITFASLPTGGNDLKRIRFSREMFDKWQAQRWWGENYDKIVELYNVQ 196          
BLAST of EY757925 vs. ExPASy Swiss-Prot
Match: BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  221 QTERKERMVQAESGVYITLSTLPGGGNEVKRVRFSRKHFTEQEAEKWWSENGAKICERYNIR 406
            + E KE + Q E GV IT  +LPGGGN++KR+RFSR  F + +A++WW++N  K+ E YN++
Sbjct:  146 EKEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQ 207          
BLAST of EY757925 vs. ExPASy Swiss-Prot
Match: BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  221 QTERKERMVQAESGVYITLSTLPGGGNEVKRVRFSRKHFTEQEAEKWWSENGAKICERYNIR 406
            + E KE + Q E GV IT  +LP GGN++KR+RFSR+ F + +A+KWW+EN  K+ E YN++
Sbjct:  139 EDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVMELYNVQ 200          
The following BLAST results are available for this feature:
BLAST of EY757925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BRXL1_ORYSJ4.404e-1328.64Protein Brevis radix-like 1 OS=Oryza sativa subsp.... [more]
BRXL1_ARATH1.281e-1231.90Protein Brevis radix-like 1 OS=Arabidopsis thalian... [more]
BRX_ARATH2.854e-1253.45Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BR... [more]
BRXL4_ARATH4.869e-1248.39Protein Brevis radix-like 4 OS=Arabidopsis thalian... [more]
BRXL2_ARATH6.359e-1250.00Protein Brevis radix-like 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-029-B07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757925 ID=EY757925; Name=EY757925; organism=Citrus sinensis; type=EST; length=736bp
GAATGAAGTTATAAAGTCCCTAACTGTTCAGTTGAAAAAGATGGCTGAAA
AATCACCGGAAGGAGCGAGTCCCAGCTTCACTTCAGGTTCTACTGCCAGA
CACCCGTCTGGTGTTCGAACAACATATTCAACTGAGAGCCATAAAACAAA
CACAACAGCTCCTGCAAGTGAGTCCAATAGCAATTCAGCTCAGCAGAACT
TATCTCATGGAACCAAGGTACAAACAGAAAGGAAAGAGCGGATGGTGCAA
GCTGAATCTGGAGTGTACATCACTTTATCTACCTTGCCAGGTGGTGGTAA
TGAAGTCAAGCGTGTTCGCTTCAGTCGGAAGCATTTCACAGAACAAGAAG
CAGAGAAGTGGTGGAGTGAAAATGGAGCCAAAATATGTGAGCGGTACAAC
ATCCGAAGTTCACATTAGTGGCCGGTGCTTCCTTATTTTCCCTGTAAGAA
GGCAGACTTGACTGACACCATCAATGCTGACCTTCTTCCTCTCTATTCGA
AGCTGTAAATTTTTTTTCTGAGTCGTTCAGTGGAGCTTTTTACCGTTCGT
TGTANGTCACAAGTTGGCAGATAGGTTGAGAGATAAAGAAAAGAGTGTAN
GAAAGGGCATGGTCGAAATAGTGCATTTTGACTTTGAGATTGNTATATCC
TGAAAAACTGTTGGCAGATTATTTATTTATTAATTATCCNTTTGCAAAAA
AAAAAAAGGNCGCCGCTCTAGAGATCCAGCTTACGT
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