EY757208

Overview
NameEY757208
Unique NameEY757208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9741 contig Csv1_Contig9741:587..1131. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY757208 vs. ExPASy Swiss-Prot
Match: LSM1_SCHPO (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe GN=lsm1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.865e-17
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 3
Query:   15 STSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 221
            S SL  Y+D+K++V+LRDG+KL+G L SFDQFAN +L+   ER+ V D+Y DI  G+Y++RGENVVL+G
Sbjct:   13 SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLG 81          
BLAST of EY757208 vs. ExPASy Swiss-Prot
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.658e-16
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3
Query:   12 LSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 221
            +S+ L   +DKKL+V+LRDGRK +G + +FDQFAN VL+   ER+ VGD Y D  LGL+ IRG+NVV++G
Sbjct:    1 MSSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILG 70          
BLAST of EY757208 vs. ExPASy Swiss-Prot
Match: LSM1_MOUSE (U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3
Query:    9 PLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 221
            P + SL   +DKK LVLLRDGR L+G L S DQFAN VL    ER+ VG  Y DIP G++V+RGENVVL+G
Sbjct:    5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLG 75          
BLAST of EY757208 vs. ExPASy Swiss-Prot
Match: LSM1_HUMAN (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3
Query:    9 PLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 221
            P + SL   +DKK LVLLRDGR L+G L S DQFAN VL    ER+ VG  Y DIP G++V+RGENVVL+G
Sbjct:    5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLG 75          
BLAST of EY757208 vs. ExPASy Swiss-Prot
Match: LSM1_BOVIN (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 3
Query:    9 PLSTSLASYLDKKLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIG 221
            P + SL   +DKK LVLLRDGR L+G L S DQFAN VL    ER+ VG  Y DIP G++V+RGENVVL+G
Sbjct:    5 PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLG 75          
The following BLAST results are available for this feature:
BLAST of EY757208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM1_SCHPO7.865e-1757.97U6 snRNA-associated Sm-like protein LSm1 OS=Schizo... [more]
LSM1_DICDI6.658e-1655.71Probable U6 snRNA-associated Sm-like protein LSm1 ... [more]
LSM1_MOUSE1.937e-1560.56U6 snRNA-associated Sm-like protein LSm1 OS=Mus mu... [more]
LSM1_HUMAN1.937e-1560.56U6 snRNA-associated Sm-like protein LSm1 OS=Homo s... [more]
LSM1_BOVIN1.937e-1560.56U6 snRNA-associated Sm-like protein LSm1 OS=Bos ta... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-018-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757208 ID=EY757208; Name=EY757208; organism=Citrus sinensis; type=EST; length=537bp
CCACGCGTCCGCTCTCTACTTCTCTTGCCAGTTATTTAGACAAGAAATTG
CTTGTACTGCTTCGCGATGGGCGAAAGCTTATGGGGACACTTTGTTCCTT
TGATCAATTTGCCAATGCTGTCCTTGAGGGTGCATGTGAGAGAGTTATTG
TTGGTGACCTTTATTGTGACATTCCTTTAGGCCTGTATGTAATTCGTGGG
GAGAATGTTGTTTTAATTGGACTTGGAGAGGGATGAGCTTCCTCCACATC
TGACCCATGTTTCAGTTGCTGAAATTAAAAGAGCTCAGAAAGCAGAGAGG
GAGGCATCAGATCTTAAAGGTTCAATGCGGAAAAGAATGGAGTTTCTGGA
TCTGGACTAGCATGCATCGTGCACCCAATGTTTCGCAAAATATTAAGCGG
TTGGTGGTGCAGGAGAATTGATTAGCATTCGATGCTCCCTGGCAAATCTT
TGTATATTATTAGTCAAGAATGCTTGTACTATGTATGATTTGCAATTTGC
AGTTGGTACTGGTTTCATCAAAAAAAAAAAAAAAAAA
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