EY757203

Overview
NameEY757203
Unique NameEY757203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY757203_ssr807 microsatellite EY757203_ssr807:807..820. BLAST: Citrus ESTs to Prunus persica proteins V1
EY757203_ssr425 microsatellite EY757203_ssr425:425..436. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig899 contig Csv1_Contig899:420..1283. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY757203 vs. ExPASy Swiss-Prot
Match: SET_DROME (Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 52/115 (45.22%), Postives = 68/115 (59.13%), Query Frame = 2 
Query:   11 EDVKSGYSITFNFSPNPYFEDNKLTKTFTF----LDDDGSMKI-TATSIKWKEGMGIPNGVNHEKKGNKRPLAEE--SFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 334
            ED+KSGY I F+F  NPYFE+  LTK F        ++G     T+T IKWKEG  +   +  +  GNK+    E  +FF WFSD       D + DE+AE+IK+DLWPNPL Y+
Sbjct:  117 EDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAASENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFSDNT-----DPVNDEIAELIKDDLWPNPLQYY 226
[Close]
BLAST of EY757203 vs. ExPASy Swiss-Prot
Match: SET_RAT (Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 2 
Query:   11 EDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 334
            ED+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+ E+IK+D+WPNPL Y+
Sbjct:  128 EDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADELGEVIKDDIWPNPLQYY 232
[Close]
BLAST of EY757203 vs. ExPASy Swiss-Prot
Match: SET_MOUSE (Protein SET OS=Mus musculus GN=Set PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 2 
Query:   11 EDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 334
            ED+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+ E+IK+D+WPNPL Y+
Sbjct:  128 EDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADELGEVIKDDIWPNPLQYY 232
[Close]
BLAST of EY757203 vs. ExPASy Swiss-Prot
Match: SET_HUMAN (Protein SET OS=Homo sapiens GN=SET PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 2 
Query:   11 EDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP--NGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 334
            ED+KSGY I F F  NPYFE+  L+K F  L++ G     +T IKWK G  +   +     K   KR   E ESFFTWF+D       D   DE+ E+IK+D+WPNPL Y+
Sbjct:  129 EDIKSGYRIDFYFDENPYFENKVLSKEF-HLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADELGEVIKDDIWPNPLQYY 233
The following BLAST results are available for this feature:
BLAST of EY757203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SET_DROME5.354e-1945.22Protein SET OS=Drosophila melanogaster GN=Set PE=1... [more]
SET_RAT4.532e-1845.05Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2[more]
SET_MOUSE4.532e-1845.05Protein SET OS=Mus musculus GN=Set PE=1 SV=1[more]
SET_HUMAN4.532e-1845.05Protein SET OS=Homo sapiens GN=SET PE=1 SV=3[more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-018-F07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY757203 ID=EY757203; Name=EY757203; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGAAGATGTCAAATCAGGATACTCCATCACATTTAACTTCT
CCCCCAATCCCTATTTTGAAGATAACAAACTTACCAAGACTTTCACCTTC
CTTGATGATGATGGTTCAATGAAAATTACTGCTACATCAATCAAGTGGAA
AGAGGGCATGGGCATACCAAATGGAGTTAATCATGAGAAGAAAGGAAACA
AGCGGCCATTGGCGGAAGAAAGCTTCTTTACCTGGTTCAGTGATACCCAA
GAGAAGGATACTATTGATGGTATCCAAGATGAGGTTGCAGAGATTATCAA
GGAGGATTTATGGCCCAATCCTCTCACTTATTTTAACAATGAAGCTGATG
AAGAGGAGTTTGAAGGCGATGAAGAGGGTAAAGAAGATGATGACTCTGAA
GATGATGAAGATGATCAAGAGGAAGATGATGATGATGAAGACGGTGATGA
TGAAGGCAACTGAGTTATCTTCATCTTAATCCAGATATCAGCTTATGTTA
GATGTCCTTGCTTCGGTAAACTTGGTGTAAAGTTGTTTCTTGTGGTTGCT
TCAGTAGGGTGACAAGGGAGGGCAACCACTCAAACTCTTATGATAGCCTT
TTTGTCTAGTGTGTATGCCAACAGACCGTACTCTGTTTCTTTTATTTAAG
GCCCTTTTCCTGCGTTCACTGGGTTTAATTTTGTGAGTTCCCTCCCTTAT
CTTAGATTATAATAGAATGTGGCCTTTTATTTTATTTCTGTTTCAGACTC
TGCAATAGAGTAAAAAGCACATTTATATTAATGACATGTAATGTTATTTT
GGCACTTATATATATATATACNAGGAAATCATGATTCCATAAAAAAAAAA
AAAAAAAAAAAAAAA
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