EY756885

Overview
NameEY756885
Unique NameEY756885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig491 contig Csv1_Contig491:47..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.073e-72
Identity = 146/210 (69.52%), Postives = 160/210 (76.19%), Query Frame = 3
Query:   51 VNIFSKKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDQLEKRLAALR 680
            +NIF+KKPNP+E LRESKREM  ATRG+EKEIG+L+ EEKKL  EIKRTAK+GNEGATKILARQLIRLRQQIANLQGSRAQ+RGIATHTQAMHAH                    M+PAKQAKVMREFQKQSAQMDMTTEMMSD+I                  QVLDEIG+D+ASQLS+APKGKI  K  ED  SSGID+LEKRLAALR
Sbjct:    1 MNIFTKKPNPREVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLAALR 210          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.663e-57
Identity = 125/220 (56.82%), Postives = 151/220 (68.64%), Query Frame = 3
Query:   51 VNIFSKKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASK----------NTEDASSSGIDQLEKRLAALR 680
            +NIF KK  PK+ALR SKREM  ATRG+E+EI +L+ EEK+L AEIK+TAKTGNE ATKILARQL+RLRQQI NLQGSRAQIRG+ THTQA++A                    QM P KQAKV+++FQKQSAQ+DMT EMMS+ I                  QVLDEIGV VASQLS+APKG+IA+K            +++ SS +D+LEKRLA+LR
Sbjct:    1 MNIFKKKTTPKDALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLR 220          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.768e-26
Identity = 76/220 (34.55%), Postives = 112/220 (50.91%), Query Frame = 3
Query:   54 NIFSKKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKI---ASKN-------TEDASSSGID-QLEKRLAALR 680
            +IF K+  P E LRE+KR +  + R +E+E   L+ +EKKL  EIK+TAK G  GA K++A+ LIR R QI      ++Q++G++   Q + +                    QM      K+M+EF++Q+ +M+M +E+M D I                  QVLDEIG+D+  +L  AP G +   A+KN       T    S GID  L+ RL  LR
Sbjct:    4 SIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLR 223          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.883e-25
Identity = 62/206 (30.10%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   66 KKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DQLEKRLAAL 677
            KK    + +RE  +E++   R + ++  AL ++EK+L  EIK+ AKTGN+ A ++LA+QL++LR+Q        +++  ++T T+ M +                    +M+P K  + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ AP       +T  A S GI  +++E++L AL
Sbjct:    6 KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSAAKSKGISDEEIERQLKAL 211          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: CHM2B_XENTR (Charged multivesicular body protein 2b OS=Xenopus tropicalis GN=chmp2b PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.421e-24
Identity = 61/206 (29.61%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   66 KKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DQLEKRLAAL 677
            KK    + +RE  +E++   R + ++  AL ++EK+L  EIK+ AK GN+ A ++LA+QL++LR+Q        +++  ++T T+ M +                    +M+P K  + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ AP       +T  + SSGI  +++E++L AL
Sbjct:    6 KKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSASKSSGISDEEIERQLKAL 211          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: CHM2B_DANRE (Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.856e-24
Identity = 61/206 (29.61%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   66 KKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DQLEKRLAAL 677
            KK    + ++E  +E++   R + ++  AL ++EK+L  EIK+ AKTGN  A K+LA+QL+++R+Q        +++  ++T T+ M++                    +M+P K  + ++ FQK++A+MDMT EMM+DT+                  QVLDEIG++++ +++ AP     + +   A + GI  + +E++L AL
Sbjct:    6 KKKTVDDVIKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAKADGISDEDIERQLKAL 211          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: CHM2B_CHICK (Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.423e-24
Identity = 61/206 (29.61%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   66 KKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGK--IASKNTEDASSSGIDQLEKRLAAL 677
            KK    + ++E  RE++   R + ++  AL ++E++L  EIK+ AKTGN+ A K+LA+QL++LR+Q        +++  ++T T+ M++                    +M+P K  + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ AP     + S +T  AS+   +++E++L AL
Sbjct:    6 KKKTVDDIIKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTISDEEIERQLKAL 211          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: CHM2B_PONAB (Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 61/206 (29.61%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   66 KKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDQLEKRLAAL 677
            KK    + ++E  RE++   R + ++  AL ++EK+L  EIK+ AK GN+ A K+LA+QL+ LR+Q        +++  ++T T+ M++                    +M+P K  + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ AP     + S +T  A+ S  +++E++L AL
Sbjct:    6 KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLKAL 210          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: CHM2B_HUMAN (Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 61/206 (29.61%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   66 KKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDQLEKRLAAL 677
            KK    + ++E  RE++   R + ++  AL ++EK+L  EIK+ AK GN+ A K+LA+QL+ LR+Q        +++  ++T T+ M++                    +M+P K  + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ AP     + S +T  A+ S  +++E++L AL
Sbjct:    6 KKKTVDDVIKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLKAL 210          
BLAST of EY756885 vs. ExPASy Swiss-Prot
Match: CH2BA_XENLA (Charged multivesicular body protein 2b-A OS=Xenopus laevis GN=chmp2b-A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.969e-23
Identity = 58/206 (28.16%), Postives = 111/206 (53.88%), Query Frame = 3
Query:   66 KKPNPKEALRESKREMQHATRGMEKEIGALRQEEKKLGAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHXXXXXXXXXXXXXXXXXXXQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIXXXXXXXXXXXXXXXXXXQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DQLEKRLAAL 677
            KK    + +++  +E++   R + ++  AL ++EK+L  EIK+ AK GN+ A K+LA+QL++LR+Q        +++  ++T T+ M +                    +M+P K  + M+ FQK++ +M+MT EM++DT+                  QVLDEIG++++ +++ AP       +   + S+GI  +++E++L AL
Sbjct:    6 KKKTVDDIIKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSASASKSTGISDEEIERQLKAL 211          
The following BLAST results are available for this feature:
BLAST of EY756885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VPS2C_ARATH1.073e-7269.52Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2B_ARATH1.663e-5756.82Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2A_ARATH5.768e-2634.55Vacuolar protein sorting-associated protein 2 homo... [more]
CH2BB_XENLA4.883e-2530.10Charged multivesicular body protein 2b-B OS=Xenopu... [more]
CHM2B_XENTR1.421e-2429.61Charged multivesicular body protein 2b OS=Xenopus ... [more]
CHM2B_DANRE1.856e-2429.61Charged multivesicular body protein 2b OS=Danio re... [more]
CHM2B_CHICK2.423e-2429.61Charged multivesicular body protein 2b OS=Gallus g... [more]
CHM2B_PONAB5.969e-2329.61Charged multivesicular body protein 2b OS=Pongo ab... [more]
CHM2B_HUMAN5.969e-2329.61Charged multivesicular body protein 2b OS=Homo sap... [more]
CH2BA_XENLA5.969e-2328.16Charged multivesicular body protein 2b-A OS=Xenopu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-G07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756885 ID=EY756885; Name=EY756885; organism=Citrus sinensis; type=EST; length=855bp
CCACGCGTCCGAATTATTCTAACTCACAACAACATCGAAACAAAAAAGAA
GTGAACATCTTTTCCAAAAAGCCAAACCCTAAAGAGGCTCTTCGAGAGAG
CAAGAGAGAAATGCAGCACGCTACTAGAGGCATGGAGAAGGAAATTGGAG
CACTACGACAAGAAGAAAAGAAGCTTGGTGCTGAGATAAAAAGAACCGCT
AAAACAGGAAATGAGGGTGCTACTAAAATTCTGGCCCGGCAGCTGATCAG
ACTGAGGCAGCAAATAGCTAACTTACAGGGGAGTCGAGCTCAAATAAGAG
GCATAGCTACTCACACACAGGCTATGCATGCACATTCTTCAGGTGCTGTT
GGCATGAAAGGAGCCAGTAAGGCAATGGCAGCCATGAATAAGCAAATGGA
ACCTGCGAAGCAAGCCAAGGTTATGCGGGAATTCCAGAAGCAATCAGCAC
AGATGGATATGACTACTGAAATGATGTCCGATACCATTGATGATGCCTTG
GACAATGATGAGGCTGAAGAGGAAACTGAAGAGCTGACAAATCAAGTGCT
AGATGAAATTGGTGTTGATGTTGCCTCACAGCTGTCAGCAGCTCCAAAAG
GTAAAATCGCCAGTAAAAACACGGAAGATGCCAGCAGTTCGGGCATTGAC
CAGCTTGAGAAGCGGTTGGCGGCTCTCAGAAATCCATGAGTTTTTGCAGT
TTCCTCTTCAAAACACCTTTGTTTTTATATAAATTTTTTTGTACAATAAA
TCTTTTAGNTGGAATCGAGGTGATCCTCCCTACTACAGTTCGCACCCCTG
TAAGATGCCACTGTCGATATAATCCCATTGATTGATTAAAAAAGAAAAAA
TGGGC
back to top