EY756879

Overview
NameEY756879
Unique NameEY756879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3611 contig Csv1_Contig3611:263..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.232e-42
Identity = 79/104 (75.96%), Postives = 94/104 (90.38%), Query Frame = 3
Query:   12 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHYYGGKDEV 323
            GISASTLT++LN+SS RCWSSD+YNPVPGVM+GVP+SR+Y GGFASKLMAKDLNLA ASA+EVG   PL S+AQ+IY K+CE GH++KDFSCVF+H+Y GKDEV
Sbjct:  244 GISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 56/98 (57.14%), Postives = 64/98 (65.31%), Query Frame = 3
Query:    6 RPGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 299
            R G+    L KILN SS RCWSSD+YNPVPGVM+GVP+S NY GGF + LMAKDL LA  SA        L S A  IY  +C  G+  KDFS VFQ+
Sbjct:  231 RSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQY 328          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 56/98 (57.14%), Postives = 63/98 (64.29%), Query Frame = 3
Query:    6 RPGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQH 299
            R G+    L KILN SS RCWSSD+YNPVPGVM GVP+S NY GGF + LMAKDL LA  SA        L S A  IY  +C  G+  KDFS VFQ+
Sbjct:  231 RSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQY 328          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.607e-24
Identity = 56/97 (57.73%), Postives = 64/97 (65.98%), Query Frame = 3
Query:    6 RPGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 296
            R G+    L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA  SA        L SQA  IY  +C  G+  KDFS VFQ
Sbjct:  232 RLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQ 328          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 55/97 (56.70%), Postives = 63/97 (64.95%), Query Frame = 3
Query:    6 RPGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 296
            R G+    L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA  SA        L S A  IY  +C  G+  KDFS VFQ
Sbjct:  232 RLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGATLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 55/97 (56.70%), Postives = 63/97 (64.95%), Query Frame = 3
Query:    6 RPGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 296
            R G+    L KILN SS RCWSSD+YNPVPGVM+GVP++ NY GGF + LMAKDL LA  SA        L S A  IY  +C  G+  KDFS VFQ
Sbjct:  232 RLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQ 328          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_DROME (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.136e-20
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 3
Query:    6 RPGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 293
            R G+ A+   +I+NSS+ RCW+S+ YNPVPGV    PA+R+Y GGF+S L+ KDL LA   A       PL S A  +Y  LC+ G  +KDFS V+
Sbjct:  219 RQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGFSSALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVY 314          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.556e-19
Identity = 48/96 (50.00%), Postives = 59/96 (61.46%), Query Frame = 3
Query:    6 RPGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVF 293
            + G+    L  I N+SSARCW+S+ YNP PGV+E  PASR Y GGF S LM KDL LA+ SAK +G    L + A  +Y  L   G   KDFS V+
Sbjct:  215 KQGMDPKKLAGIFNTSSARCWTSELYNPCPGVIETSPASRGYTGGFGSALMTKDLGLAVDSAKSIGEPLLLGNSAHQLYTLLVAKGDGQKDFSVVY 310          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: 3HIDH_CAEEL (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.915e-19
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 3
Query:   12 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCEN-GHDSKDFSCVFQ 296
            G+ A  L  I+N+SS RCWSSD+YNPVPGV+E +P+ R Y GGF + LMAKDL+LA  ++       P+ S A  IY  L  +  + +KDF  V+Q
Sbjct:  197 GLDAKALAGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGFGTTLMAKDLSLAQNASTNTQAPTPMGSLAHQIYRILARDPQYQAKDFGVVYQ 292          
BLAST of EY756879 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 42/104 (40.38%), Postives = 62/104 (59.62%), Query Frame = 3
Query:   12 GISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYA--KLCENGHDSKDFSCVFQHYYGGKD 317
            G+  + L++++  SS   W+ + YNP PGVM   PAS  Y GGF  +LM KDL LALA+A+ V    PL + A+++++     +  H+  DFS + Q  Y GKD
Sbjct:  196 GLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAPASNGYAGGFQVRLMNKDLGLALANAQAVQASTPLGALARNLFSLHAQADAEHEGLDFSSI-QKLYRGKD 298          
The following BLAST results are available for this feature:
BLAST of EY756879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
3HIDH_ARATH2.232e-4275.96Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_RAT7.213e-2557.143-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_MOUSE1.230e-2457.143-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_BOVIN1.607e-2457.733-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_PONAB1.042e-2356.703-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_HUMAN1.042e-2356.703-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_DROME3.136e-2047.92Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_DICDI1.556e-1950.00Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_CAEEL5.915e-1947.92Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
MMSB_PSEAE4.386e-1440.383-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-G01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756879 ID=EY756879; Name=EY756879; organism=Citrus sinensis; type=EST; length=671bp
CCACGCGTCCGGGAATATCTGCTAGTACTCTAACAAAGATATTGAACTCT
TCAAGTGCTCGCTGTTGGAGTAGTGACAGTTATAATCCTGTTCCTGGGGT
GATGGAAGGGGTGCCGGCTTCAAGGAATTATGGTGGTGGGTTTGCATCTA
AGCTCATGGCCAAAGACTTGAACCTTGCTTTGGCATCAGCAAAAGAGGTT
GGCGTCGATTGCCCGTTAACATCACAAGCACAAGACATATACGCGAAGCT
CTGTGAGAATGGACATGATTCCAAGGACTTCTCCTGCGTTTTCCAGCATT
ATTATGGAGGCAAGGATGAAGTTTAGCTTCAACATTCAAGGACACTGCTT
TTACAAATCCATTCTGATTCTCTTGTAAAATCAAAGCGCATTCAATCAAA
ATTAGCTCCCTAAGGCTCGTCCCTTTTCACAGAATAAATTGCAGCTAATA
AAATCTTTTTCAGTTATATGAATATTTACCCATGAAGAGATAGAGATAGA
GAATCATGTAATATGCATGTTGGAAAGCCATTAAGCCAATGTGCTTTTCT
TGTCCATTGCCGTGGGAAATCTTTCTTTTTCCCTTTCTCTTTTTCTTTTT
TAATAATCTCAAACCAAAAAAAAAAAAGATAGAANGGAAAANNNNNNNAN
NNNAAAAAAAAAAAAAAAAAA
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