EY756875

Overview
NameEY756875
Unique NameEY756875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756875 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.767e-14
Identity = 49/108 (45.37%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  489 TYFSINCILFEYVEIRR*FDVQTHRYRLRDAYIMPYFSPPT*VDYSEGIYNLLHFARXDXAKEKELANGRLAVLRFLGSIXQHTVMRKRTSDILPTIIYDLWRHFIGQ 812
            T F I  ILF YVEIRR  D++      +D     Y  P   V Y  GI+N L+FA    AKEKELANGRLA+L FLG + QH V  K   + L   + D W + I Q
Sbjct:  141 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQ 248          

HSP 2 Score: 21.1718 bits (43), Expect = 3.767e-14
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 1
Query:  403 P*CITDNDIINAPQWY 450
            P   T   IIN P+WY
Sbjct:  113 PEVFTKIGIINVPEWY 128          
BLAST of EY756875 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.353e-13
Identity = 50/108 (46.30%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  489 TYFSINCILFEYVEIRR*FDVQTHRYRLRDAYIMPYFSPPT*VDYSEGIYNLLHFARXDXAKEKELANGRLAVLRFLGSIXQHTVMRKRTSDILPTIIYDLWRHFIGQ 812
            T F I  IL  YVEIRR  D++      +D     Y  P   V Y  GI+N L+FA    AKEKE+ANGRLA+L FLG I QH V  K   D L   I D W + I Q
Sbjct:  140 TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQ 247          

HSP 2 Score: 21.1718 bits (43), Expect = 2.353e-13
Identity = 8/16 (50.00%), Postives = 9/16 (56.25%), Query Frame = 1
Query:  403 P*CITDNDIINAPQWY 450
            P   T   IIN P+WY
Sbjct:  112 PEVFTSIGIINVPKWY 127          
The following BLAST results are available for this feature:
BLAST of EY756875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB24_ARATH3.767e-1445.37Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA2.353e-1346.30Chlorophyll a-b binding protein P4, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-F09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756875 ID=EY756875; Name=EY756875; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGATACTTCACTCGCCACCACTCATGGACGACGATGCTCAT
AAGTCTCAGCTAATAACGTGCCCACCGGAGATGCACAAGACTCTCCCGCC
GTGCTACCAGCACACTGCGCACTGCAATATCTCGCTCTCACTGCTGCTTA
CCGTATTTTAATCAATGGAAATCGACCTACAAACCAGGAGGATCTCGCCC
TCCTTTCGGAGGATCTCCCTACAAACGAGAACGGATTCCTCAGCTTGGTC
TCACCTCCTTACCATCATGCCCAACCTCCTCTGGGGCCATCGATTAGACC
CCTTTCCGCTTGGCGATTATTCTCTACAATCAAGACGATATCTGCTAGAT
TACCTTGTAAGATCTCACTTTGCCGTGTAACAGGCTCTTAAAATGTTGCT
CGCCCTGATGTATCACTGACAATGATATTATCAATGCTCCTCAATGGTAT
TAGTGCTGGTAAAGCTTAGAAATTTGCATCCTCATCAAACCTACTTCTCG
ATCAACTGCATCTTGTTCGAATATGTGGAGATCAGACGATGATTCGATGT
ACAGACCCACCGATATCGTCTTCGCGACGCCTATATCATGCCGTACTTCT
CGCCTCCTACTTAAGTCGACTACTCCGAAGGTATATACAATCTGCTGCAC
TTTGCACGCNCTGACGANGCAAAGGAGAAAGAGCTTGCCAATGGGAGATT
GGCGGTGTTGCGCTTCTTAGGATCTATTGNTCAGCACACTGTGATGCGCA
AACGTACATCTGATATCCTGCCTACAATAATCTATGACCTGTGGCGACAC
TTCATCGGTCAGAACTGAGAGAACCTGATCAAACACGATTGAGCATCTCG
GACCCTGTTCTTTCTTTGGATGATGGATCTGGAGTATGTCGGACA
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