EY756845

Overview
NameEY756845
Unique NameEY756845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756845 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.774e-15
Identity = 46/91 (50.55%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  165 GKGNPTIDRK*NAYHAALNAFPNDESLTVDTASSRRKVCNCIYEEDLLLIGDYFTPSG*GNSCNYVRASSLSAKSSYMDGSITSGAGAHTC 437
            G  NPTI+ + N Y A  N F  + +  VDT +S  K  N   E DLL  G YFT SG   S +Y RASSLSAKSS + G ITS AGA  C
Sbjct:  333 GSANPTINSQGNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGALPC 423          

HSP 2 Score: 26.9498 bits (58), Expect = 5.774e-15
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 2
Query:   62 YGNGLFLTMLRCSPGYFHEMN 124
            +G GL   M RC  GYFH +N
Sbjct:  300 FGVGLIQRMPRCRHGYFHVVN 320          
BLAST of EY756845 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.026e-13
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  165 GKGNPTIDRK*NAYHAALNAFPNDESLTVDTASSRRKVCNCIYEEDLLLIGDYFTPSG*GNSCNYVRASSLSAKSSYMDGSITSGAGAHTC 437
            G   PTI+ + N Y A ++ F  + +  V+T +S  K  N   E DLLL G +F PSG G S +Y RASSL+AK S M  +ITS AGA  C
Sbjct:  374 GSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGC 464          

HSP 2 Score: 27.7202 bits (60), Expect = 1.026e-13
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 2
Query:   62 YGNGLFLTMLRCSPGYFHEMN 124
            +G GL   M RC  GYFH +N
Sbjct:  341 FGEGLVQRMPRCRHGYFHVVN 361          
BLAST of EY756845 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.805e-13
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  165 GKGNPTIDRK*NAYHAALNAFPNDESLTVDTASSRRKVCNCIYEEDLLLIGDYFTPSG*GNSCNYVRASSLSAKSSYMDGSITSGAGAHTC 437
            G   PTI+ + N + A +N F  + +    T  S+ K  N   E DL L G +FT SG G   NY RASSLSAKSS + G++TS +GA  C
Sbjct:  320 GSAGPTINSQGNRFLAPVNPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSLVGTMTSYSGALNC 410          

HSP 2 Score: 28.1054 bits (61), Expect = 3.805e-13
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 2
Query:   62 YGNGLFLTMLRCSPGYFHEMN 124
            +G GL   M RC  GYFH +N
Sbjct:  287 FGEGLIQRMPRCRHGYFHVVN 307          
BLAST of EY756845 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.942e-13
Identity = 39/91 (42.86%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  165 GKGNPTIDRK*NAYHAALNAFPNDESLTVDTASSRRKVCNCIYEEDLLLIGDYFTPSG*GNSCNYVRASSLSAKSSYMDGSITSGAGAHTC 437
            G  NPTI+ + N + A  N F  + +  V          N   + DL+L G YFT SG G S NY RASSL+AKSS + G +TS +GA  C
Sbjct:  322 GSANPTINSQGNRFLAPGNRFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLVGMLTSSSGALKC 412          

HSP 2 Score: 28.1054 bits (61), Expect = 4.942e-13
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 2
Query:   62 YGNGLFLTMLRCSPGYFHEMN 124
            +G GL   M RC  GYFH +N
Sbjct:  289 FGEGLIQRMPRCRHGYFHVVN 309          
BLAST of EY756845 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 7.059e-11
Identity = 37/91 (40.66%), Postives = 48/91 (52.75%), Query Frame = 3
Query:  165 GKGNPTIDRK*NAYHAALNAFPNDESLTVDTASSRRKVCNCIYEEDLLLIGDYFTPSG*GNSCNYVRASSLSAKSSYMDGSITSGAGAHTC 437
            G  NPTI+ + N + A    F  + +   D   S  K  N     DLLL G +FTPSG   S +Y +ASSL AK S + G +TS +GA  C
Sbjct:  312 GSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNC 402          

HSP 2 Score: 27.7202 bits (60), Expect = 7.059e-11
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 2
Query:   62 YGNGLFLTMLRCSPGYFHEMN 124
            +G GL   M RC  GYFH +N
Sbjct:  279 FGEGLVQRMPRCRHGYFHVVN 299          
The following BLAST results are available for this feature:
BLAST of EY756845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PEL1_ARATH5.774e-1550.55Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH1.026e-1346.15Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH3.805e-1343.96Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL14_ARATH4.942e-1342.86Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL18_ARATH7.059e-1140.66Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-C10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756845 ID=EY756845; Name=EY756845; organism=Citrus sinensis; type=EST; length=523bp
CCACGCGTCCGGCTACAATGGAGCACATACATATGTCCTGTAACCATTGC
TTACTCTCATTTATGGAAATGGACTCTTTCTTACAATGCTTAGGTGCTCA
CCTGGTTATTTTCATGAGATGAACACATGACTCACTCTCCCTGGGTACAA
GTATGCCATTGATAGGAAAAGGAAACCCCACCATCGACAGAAAATGAAAC
GCATACCATGCTGCATTGAATGCCTTCCCAAACGATGAATCGCTGACGGT
GGACACGGCTTCAAGTCGAAGAAAAGTCTGTAACTGTATATATGAAGAAG
ACCTCTTGCTGATCGGAGACTACTTTACCCCATCTGGATGAGGAAACTCA
TGTAATTATGTTCGAGCTTCGAGCTTGTCAGCCAAGTCTTCCTACATGGA
CGGATCCATTACTTCTGGAGCTGGAGCTCATACTTGCCGCTAGAGCCGGC
GAAGCTCATATGATTCATCATTAAATTGGCCGTTAATAGAAATGGCCATC
GAATTTCTGTTTTGTTTTTAAAA
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