EY756840

Overview
NameEY756840
Unique NameEY756840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig980 contig Csv1_Contig980:724..1358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY756840 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.014e-38
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   47 LRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 295
            L+GIWNFTNPGVVSHNEILEMY+ YINPEFKW NFTL+EQAKVIVAPRSNNEMDASKLKKEFPELLSIK+SLIKY + PNKKT
Sbjct:  587 LKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669
[Close]
BLAST of EY756840 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.552e-37
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 2 
Query:   47 LRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 295
            LRGIWNFTNPGVVSHNEILEMYK YI P+FKW NF L+EQAKVIVAPRSNNEMD +KL KEFPE+LSIKDSLIKYVFEPNK+T
Sbjct:  582 LRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664
[Close]
BLAST of EY756840 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.209e-36
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 2 
Query:   47 LRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLDEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 295
            LRGIWNFTNPGVVSHNEILEMYK YI P FKW NFT++EQAKVIVA RSNNEMD SKL KEFPE+LSIK+SL+KYVFEPNK+T
Sbjct:  585 LRGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667
The following BLAST results are available for this feature:
BLAST of EY756840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RHM1_ARATH3.014e-3889.16Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH2.552e-3786.75Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH8.209e-3684.34Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-C03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756840 ID=EY756840; Name=EY756840; organism=Citrus sinensis; type=EST; length=636bp
TGTCTCGACCCACGCGTCCGCCTCAAGTTACGCTTTGCCATCTCAATTGA
GGGGTATTTGGAACTTCACAAACCCTGGGGTTGTGAGCCACAATGAAATT
CTTGAGATGTACAAGAAGTACATTAACCCAGAATTCAAGTGGGTGAACTT
CACATTAGATGAGCAAGCAAAGGTGATAGTCGCCCCAAGAAGCAACAACG
AGATGGATGCTTCTAAGTTGAAGAAGGAGTTCCCTGAGTTGCTATCCATC
AAGGATTCACTGATCAAGTATGTCTTTGAGCCCAACAAGAAAACCTAGGG
TACATTAAGCAGCTTTCAGTTGTAGGGGCCTCTTGTTTGACCAACACATT
CTGCATTACATAATAGGTTTGGAGTACCATTGTACTGTTAATCAGCTTCA
CTCCTCATTTCTTTTTGGTGTAATCACTTTATATTTACTGCACTAGAGAT
AATTAGCCATGCTTCTTTCATTATTTTTCTTGGAGTTTTATTGAGATATG
GTTAGTGTATTTTTTCTAGAATAGGTTGCTAATATTTAATGGCATCTGCT
AGTTGCTAGTATGTAACTTTTGCAGTATCTGTTAAATGAATATGGCCGCA
TGCTGTTCGATGTAAAAAAAAAAAAAAAAAAAAAAA
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