EY756821

Overview
NameEY756821
Unique NameEY756821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756821_ssr579 microsatellite EY756821_ssr579:579..596. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756821 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 57/108 (52.78%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   12 VSSSPLDAGVVPDGNSMSDISYHLAEI*ALGPAPIQASP--YRLLVLTTASQLCGIDREAIVLRYREKTKNRKFEKTILYHSRKAYAETTPII*GRLAKRAEGDSEVD 329
            VSSS ++ GVVPDG S++D+SY        GPA   A P   R + LT+A      +REA V+RYREK KNRKFEKTI Y SRKAYAE  P I GR AKR + +   D
Sbjct:  249 VSSSSMEVGVVPDGGSVADVSYPYG-----GPATSGADPGTQRAVPLTSA------EREARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTDTNESND 345          
BLAST of EY756821 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 3
Query:   12 VSSSPLDAGVVPDGNSMSDISYHLAEI*ALGPAPIQASPYRLLVLTTAS--QLCGIDREAIVLRYREKTKNRKFEKTILYHSRKAYAETTPII*GRLAKRAEGDSEVDRLYKSATSAAGAYLADSQYGVVPS 401
            VS+S ++ GVVPDGN+ + ++           + I +S       TT    Q   +DREA VLRYREK KNRKFEKTI Y SRKAYAE+ P I GR AKR E  +E D ++ S   A+ A+   +QYGVVP+
Sbjct:  245 VSTSSIEYGVVPDGNTNNSVNR----------STITSS-------TTGGDHQASSMDREARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRTE--TENDDIFLSHVYASAAH---AQYGVVPT 354          
BLAST of EY756821 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 51/129 (39.53%), Postives = 74/129 (57.36%), Query Frame = 3
Query:   15 SSSPLDAGVVPDGNSMSDISYHLAEI*ALGPAPIQASPYRLLVLTTASQLCGIDREAIVLRYREKTKNRKFEKTILYHSRKAYAETTPII*GRLAKRAEGDSEVDRLYKSATSAAGAYLADSQYGVVPS 401
            S S +D  VVP+  + SDI+             +   P +++      QL  ++REA VLRYREK K RKF+KTI Y SRKAYAE  P I GR AKR E ++E + ++ +      + ++++ YG+VPS
Sbjct:  230 SVSSMDISVVPESTA-SDITVQHPRTTKETIDQLSGPPTQVV-----QQLTPMEREARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAEEIFST------SLMSETGYGIVPS 346          
BLAST of EY756821 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 54/130 (41.54%), Postives = 69/130 (53.08%), Query Frame = 3
Query:   12 VSSSPLDAGVVPDGNSMSDISYHLAEI*ALGPAPIQASPYRLLVLTTASQLCGIDREAIVLRYREKTKNRKFEKTILYHSRKAYAETTPII*GRLAKRAEGDSEVDRLYKSATSAAGAYLADSQYGVVPS 401
            V+ S +D GVVP+  +      +     A+   P    PY       A  L   DREA VLRYREK K RKFEKTI Y SRKAYAE  P I GR AK+ + D E ++ + +  +       D+ YG+VPS
Sbjct:  240 VNVSSMDLGVVPESTTSDATVSNPRSPKAVTDQP----PY-----PPAQMLSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKKKDVDEEANQAFSTMIT------FDTGYGIVPS 354          
BLAST of EY756821 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 49/127 (38.58%), Postives = 68/127 (53.54%), Query Frame = 3
Query:   21 SPLDAGVVPDGNSMSDISYHLAEI*ALGPAPIQASPYRLLVLTTASQLCGIDREAIVLRYREKTKNRKFEKTILYHSRKAYAETTPII*GRLAKRAEGDSEVDRLYKSATSAAGAYLADSQYGVVPS 401
            S ++ GVVP+  +    + H           ++  P     + T +QL  +DREA VLRYREK K RKFEKTI Y SRKAYAE  P + GR AKR     E++   +   +     + ++ YG+VPS
Sbjct:  258 SSMETGVVPESTACVTTASHPRT----PKGTVEQQPDPASQMITVTQLSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKR-----EIEAEEQGFNT---MLMYNTGYGIVPS 372          
BLAST of EY756821 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 45/85 (52.94%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  147 TTASQLCGIDREAIVLRYREKTKNRKFEKTILYHSRKAYAETTPII*GRLAKRAEGDSEVDRLYKSATSAAGAYLADSQYGVVPS 401
            T A QL   +REA VLRYREK KNRKFEKTI Y SRKAYAE  P I GR AKR +          S  +  G       +GVVPS
Sbjct:  219 TPAVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRTD----------SRENDGGDVGVYGGFGVVPS 293          
The following BLAST results are available for this feature:
BLAST of EY756821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL4_ARATH3.401e-1852.78Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL5_ARATH1.293e-1746.97Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL2_ARATH1.747e-1439.53Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL1_ARATH6.638e-1441.54Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
CONS_ARATH7.339e-1338.58Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL3_ARATH8.115e-1252.94Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-A08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756821 ID=EY756821; Name=EY756821; organism=Citrus sinensis; type=EST; length=730bp
CCACGCGTCCGGTTTCATCTTCACCTCTTGATGCTGGAGTAGTTCCAGAT
GGGAACTCGATGTCCGATATTTCGTACCATTTGGCCGAAATATGAGCACT
GGGTCCGGCGCCCATCCAAGCGTCACCGTATCGGCTCCTGGTGCTAACCA
CTGCAAGTCAACTTTGTGGGATCGACCGAGAAGCTATAGTTTTGCGTTAC
AGGGAGAAGACAAAGAACCGTAAATTTGAGAAAACTATTCTCTATCATTC
ACGCAAAGCTTACGCCGAAACTACACCTATAATCTAGGGCCGGCTCGCGA
AAAGAGCCGAGGGTGACTCCGAAGTTGACCGGCTTTACAAATCTGCAACT
TCAGCCGCTGGTGCCTACTTGGCCGATTCTCAATACGGCGTCGTTCCCTC
GATTTGAGGAGTAAGAAGCGGAAATTCAGAGCCATGATTCTGTCCTTCTG
GGCGCATTTGCTAAGTAATGAAACTAGAATAATCGTACGGGTGGTGCTTA
AAAGTCTTTACCATGTGTAAAATAGGGCAACCGGAGGAGGTTAAGCCGAT
TGATTGGCAGAATTATGATTCTGATTCCTGATGATGATGATGATGAGTCA
TTAATATTAACATCTCCGACATTTGTCACGCCGTGTACTTTTTCTGTAAA
GGCCTTCTGCAACTCTTACATCTGTTCAACAAAAATTTTCTCTTTTANNN
NNNNNNNNNNNNNNNNNNNNNNNNGGTCGA
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