EY756815

Overview
NameEY756815
Unique NameEY756815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756815_ssr136 microsatellite EY756815_ssr136:136..147. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756815_ssr381 microsatellite EY756815_ssr381:381..392. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY756815 vs. ExPASy Swiss-Prot
Match: DNJ11_ARATH (Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 55/110 (50.00%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:  148 LYDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQ-KEMSANEFIKIHAAYSTLSDPHKRANYDRALFVVRKRPVXXXXXXXXXXXXXXXXXRFSGNFTTRNWETDQCW 474
            LYDVL +P+ A   +IK+AYRRLAR CHPDV  T++    SA+EF+KIHAAY TLSDP KR+ YDR + + R RP+                    G++  RNWETDQCW
Sbjct:   66 LYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYDRRM-LRRSRPLTVGTSGL-------------GSYVGRNWETDQCW 161
[Close]
BLAST of EY756815 vs. ExPASy Swiss-Prot
Match: DNAJ_THEEB (Chaperone protein dnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  151 YDVLGIPVSADGNEIKAAYRRLARTCHPDVVATNQKEMSANEFIKIHAAYSTLSDPHKRANYDR 342
            Y++LG+  SAD  E+K AYRRLAR  HPDV   N++  +  +F +I+ AY  LSDP  RANYDR
Sbjct:    6 YEILGVSRSADAEELKRAYRRLARKYHPDV---NKEPGAEEKFKEINRAYEVLSDPQARANYDR 66
The following BLAST results are available for this feature:
BLAST of EY756815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DNJ11_ARATH6.364e-2250.00Chaperone protein dnaJ 11, chloroplastic OS=Arabid... [more]
DNAJ_THEEB5.054e-1153.13Chaperone protein dnaJ OS=Thermosynechococcus elon... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-014-A02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756815 ID=EY756815; Name=EY756815; organism=Citrus sinensis; type=EST; length=713bp
CCACGCGTCCGAATACTCTCCTTATAATTCTAGCCCTTCTAGCCCCTTAT
CTAAAGCTCTCACAAACTTTCATCATCCAAATAGTATAATTTATACAACG
CACGGTTTCCTTATTCAATGGCAGCAGCGGCTTCTTCGTCGTCGTCGTTG
TACGACGTGCTGGGGATTCCGGTGAGCGCCGACGGCAACGAAATCAAGGC
TGCATATCGGAGACTAGCAAGGACTTGTCACCCGGACGTGGTGGCAACGA
ACCAAAAGGAAATGTCGGCAAATGAGTTTATCAAAATCCATGCAGCTTAC
TCCACGTTATCGGATCCTCACAAACGGGCGAATTACGATCGTGCCCTTTT
CGTTGTGCGAAAACGCCCTGTTAGTTCTTTTTCTTCTTCTTCGCTTTCCT
CAGAACCAATGGGCTCCATGTCGAGATTTAGTGGAAATTTTACCACTAGA
AATTGGGAGACCGATCAGTGCTGGTAGTAATTAATACTCTTTGTTTTTTT
TTTTTTTGGATGTTAATATGGATTAATTAGTAAGTAATTANGCTAATTTT
AATATAAGCTCATATACATTTATGTGGGCTAGTTTACCAGGTGTTGTGCC
TATTAAGTTGTGAAAAAATCGATTGTACACGTATTTGATTCTTATATATT
TCCTGGGACTATCTACTGGTCCTTCTATTTATTAATTCCCGACTTTCAAG
GAAANNAAAANNN
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