EY756808

Overview
NameEY756808
Unique NameEY756808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:601..1057. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.543e-48
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  112 VEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.543e-48
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  161 VEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 3.321e-48
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  167 VEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 5.665e-48
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            + GY  AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  173 IEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 5.665e-48
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  173 VEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 7.399e-48
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  180 VEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 7.399e-48
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  173 VEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 7.399e-48
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  171 VEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 7.399e-48
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  171 VEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of EY756808 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 9.664e-48
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = 3 
Query:    6 VRGYFTAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 290
            V GY  AGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  173 VEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
The following BLAST results are available for this feature:
BLAST of EY756808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_CUCSA2.543e-4894.74Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA2.543e-4894.74Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ORYSJ3.321e-4895.79Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB27_TOBAC5.665e-4893.68Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP5.665e-4894.74Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2B_PINSY7.399e-4893.68Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB24_TOBAC7.399e-4894.74Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_TOBAC7.399e-4894.74Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_ORYSJ7.399e-4894.74Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC9.664e-4894.74Chlorophyll a-b binding protein 3C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-H06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756808 ID=EY756808; Name=EY756808; organism=Citrus sinensis; type=EST; length=458bp
CCCGCGTCCGGGGTTACTTTACCGCTGGAGGGCCGCTCGGTGAAGTGACT
GACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGA
CCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGT
TGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGC
AAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAA
CAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGG
TTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGT
TGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCT
TCAATTTGATCTANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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