EY756771

Overview
NameEY756771
Unique NameEY756771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756771_ssr704 microsatellite EY756771_ssr704:704..715. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RR9_ARATH (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana GN=RPS9 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.433e-67
Identity = 127/138 (92.03%), Postives = 131/138 (94.93%), Query Frame = 1
Query:  205 DLKKYVKSRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +LKKYVKSRLPGGFAAQ I GTGRRKCAIARVVLQEGTGK IINYRDAKEYLQGNPLWLQY+KVPLVTLGYE SYD+FVKAHGGGLSGQAQAITLGVARALL VS DHRSPLKKEGLLTRD+RVVERKKAGL KARKA
Sbjct:   65 ELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAKEYLQGNPLWLQYVKVPLVTLGYENSYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLKKARKA 202          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RR9_SPIOL (30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.085e-65
Identity = 121/138 (87.68%), Postives = 130/138 (94.20%), Query Frame = 1
Query:  205 DLKKYVKSRLPGGFAAQTIFGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            DL+K+VKSRLPGGFAAQT+ GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQY+K PL TLGYET+YDVFVKAHGGGLSGQAQAI+LGVARALL VS  HR+PLK+EGLLTRDSR+VERKK GL KARKA
Sbjct:   54 DLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPGLKKARKA 191          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_NOSP7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsI PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.950e-32
Identity = 72/119 (60.50%), Postives = 84/119 (70.59%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK A+ARV L  GTG+  +N +D   Y Q NP +L  IK PL TLG E  YD+ VKA GGGL+GQA ++ LGVARAL  +  D+R PLK EG LTRD R  ERKK GLHKARKA
Sbjct:   14 WGTGRRKNAVARVRLVPGTGQLTVNGKDGNLYFQFNPNYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRLGVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKA 132          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_THEEB (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsI PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.345e-32
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 1
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  G+G+  IN R+  +YLQ NP++L  +K PL TLG E SYD++V A GGGL+GQA AI LG+ARAL  +  ++R PLK EG LTRD R  ER+K GL KARKA
Sbjct:   14 GTGRRKSAVARVRLIPGSGQLWINGRNGADYLQNNPIYLNLVKAPLETLGLENSYDIYVNATGGGLTGQADAIRLGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKA 131          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_SYNP2 (30S ribosomal protein S9 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsI PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.675e-32
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK +IARV L  G+GK ++N R  ++Y    P +L  +K PL TLG E+ YD+ V AHGGGL+GQA A+ LGVARAL  +  D+R PLK EG LTRD R  ERKK GLHKARKA
Sbjct:   13 WGTGRRKASIARVRLVPGSGKVVVNNRSGEDYFNRIPGYLAVLKSPLETLGLESEYDILVNAHGGGLTGQADAVKLGVARALCELDPDNRQPLKIEGYLTRDPRCKERKKYGLHKARKA 131          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_SYNJA (30S ribosomal protein S9 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpsI PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 73/119 (61.34%), Postives = 81/119 (68.07%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK A+ARV L  GTGK IIN R   +YLQ     L  +K PL  LG E SYD+ V+AHGGG+ GQA AI LGVARAL  V   +R PLK EG L RD R VERKK GL KARKA
Sbjct:   13 WGTGRRKTAVARVRLVPGTGKLIINDRPGDQYLQYQEALLASVKAPLELLGLENSYDILVRAHGGGVHGQADAIKLGVARALCEVDPANRGPLKTEGYLKRDPRAVERKKYGLRKARKA 131          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_MICAN (30S ribosomal protein S9 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsI PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 69/119 (57.98%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK A+A V L  GTG   +N RD + +    P ++Q IK PL TLG E  YD+ VKA GGGL+GQA A+ LGVARAL  ++ ++R PLK EG LTRD R  ERKK GLHKARKA
Sbjct:   13 WGTGRRKSAVAAVRLVPGTGAITVNGRDGETHFNRIPTYIQTIKAPLETLGLENEYDIIVKAEGGGLTGQADAVKLGVARALCQLAPENRPPLKSEGYLTRDPRAKERKKYGLHKARKA 131          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_CYAA5 (30S ribosomal protein S9 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsI PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 70/119 (58.82%), Postives = 84/119 (70.59%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK A+ARV L  G+G+ I+N +    Y    P +LQ IK PL TLG E  YD+ V AHGGGL+GQA A+ LGVARAL  ++ ++R PLK EG LTRD R  ERKK GLHKARKA
Sbjct:   13 WGTGRRKSAVARVRLVPGSGEIIVNKKPGNIYFNRIPDYLQAIKGPLETLGLENDYDILVNAHGGGLTGQADAVKLGVARALCELAPENRPPLKAEGYLTRDPRAKERKKYGLHKARKA 131          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RR9_MESVI (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride GN=rps9 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.678e-31
Identity = 73/118 (61.86%), Postives = 84/118 (71.19%), Query Frame = 1
Query:  265 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            GTGRRK A+ARV L  G G+ IIN      YLQ N  +L  ++ PL TLG E +YD+ VKA GGGL+GQA+AI LGVARAL  +   +R PLKKEG LTRDSRV ERKK GL KARKA
Sbjct:   14 GTGRRKSAVARVRLVPGNGEVIINGLPGTNYLQFNGSYLSAVRSPLETLGLEDNYDIIVKAVGGGLTGQAEAIRLGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKA 131          
BLAST of EY756771 vs. ExPASy Swiss-Prot
Match: RS9_ANAVT (30S ribosomal protein S9 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsI PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.274e-31
Identity = 70/119 (58.82%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  262 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLXVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKA 618
            +GTGRRK A+ARV L  GTG+ I+N +    Y Q N  +L  IK PL TLG E  YD+ VKA GGGL+GQA ++ LGVARAL  +  ++R PLK EG LTRD R  ERKK GLHKARKA
Sbjct:   14 WGTGRRKSAVARVRLVPGTGQLIVNGKPGDLYFQFNANYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRLGVARALCQLDPENRPPLKTEGYLTRDPRAKERKKYGLHKARKA 132          
The following BLAST results are available for this feature:
BLAST of EY756771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR9_ARATH5.433e-6792.0330S ribosomal protein S9, chloroplastic OS=Arabido... [more]
RR9_SPIOL5.085e-6587.6830S ribosomal protein S9, chloroplastic (Fragment)... [more]
RS9_NOSP71.950e-3260.5030S ribosomal protein S9 OS=Nostoc punctiforme (st... [more]
RS9_THEEB4.345e-3259.3230S ribosomal protein S9 OS=Thermosynechococcus el... [more]
RS9_SYNP25.675e-3258.8230S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_SYNJA3.678e-3161.3430S ribosomal protein S9 OS=Synechococcus sp. (str... [more]
RS9_MICAN3.678e-3157.9830S ribosomal protein S9 OS=Microcystis aeruginosa... [more]
RS9_CYAA53.678e-3158.8230S ribosomal protein S9 OS=Cyanothece sp. (strain... [more]
RR9_MESVI3.678e-3161.8630S ribosomal protein S9, chloroplastic OS=Mesosti... [more]
RS9_ANAVT6.274e-3158.8230S ribosomal protein S9 OS=Anabaena variabilis (s... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-013-E02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756771 ID=EY756771; Name=EY756771; organism=Citrus sinensis; type=EST; length=879bp
CCACGCGTCCGGTCACCCGCAATATCTCCTCTCACATCTTCCCTCTCTTC
CCTTTCATTTTCCTCCCAAATTTCTCAGAAACCAGGCATCCCCTTTGTCT
CATTACACAGGTCCAAATCGATATCCATCTCTCCAAAAAATGATAAAACC
CCAAAACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAAC
AACTGACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGG
CTCAAACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTC
GTCCTCCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAA
GGAATATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTT
TGGTAACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCAT
GGTGGCGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCG
TGCATTGTTGAANGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAG
GCCTTCTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTC
CATAAAGCCCGCAAAGCCCACAGTATTCCAAACGGTGAGGCCAAAATTAC
AGTGTGATGGACTGTTACCCGNAGATCTATTTTCTGCTTGTATCTCCGAA
TAATATTATTATTATTAATTTTGGGTTAACATTTAAGGTTGGGAGTTTTG
GACTTCCAGTCCCGGGATCAAGGGATCAATAACAATTTTGGAAGAAGAGG
TAAAGTTGTCAAAATATTCCTTNNAAAAAAAANGGGCCAGAAATAGTNAA
AAAAAAAAGAAGGAGGGGGGCCGCCTAAA
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