EY756716

Overview
NameEY756716
Unique NameEY756716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length398
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:322..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   76 NGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   76 NGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   76 NGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.450e-30
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   76 NGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.640e-27
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +I AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   77 NGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.143e-26
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +I AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   77 NGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.143e-26
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +I AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   77 NGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.143e-26
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +I AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   77 NGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.143e-26
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +I AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   77 NGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of EY756716 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.143e-26
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:    2 HASEIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 202
            +  +I AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   77 NGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
The following BLAST results are available for this feature:
BLAST of EY756716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RS23_FRAAN5.450e-3094.0340S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES5.450e-3094.0340S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH5.450e-3094.0340S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH5.450e-3094.0340S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_DERVA5.640e-2783.5840S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_RAT2.143e-2682.0940S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_PIG2.143e-2682.0940S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_MOUSE2.143e-2682.0940S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_ICTPU2.143e-2682.0940S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_HUMAN2.143e-2682.0940S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-H03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756716 ID=EY756716; Name=EY756716; organism=Citrus sinensis; type=EST; length=398bp
CCACGCGTCCGAGATTGCAGCTTTCGTACCAAACGATGGTTGTTTGAACT
ACATTGAAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAAAGGGG
CATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAGGTTTC
AGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGAT
CCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTTTAGCACT
TTATTTTCATTAATCCCTGTTGATTACTTTTTTCCTTTATCATGTATTGC
TGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTATTAGTAAA
TTAGTATCTGTCTCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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