EY756710

Overview
NameEY756710
Unique NameEY756710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.541e-36
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VVMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPKGKGIKL+I+EEA+KR
Sbjct:  176 VVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.541e-36
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VVMVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKGTKPWVSLPK KGIKLSIIEEARKR
Sbjct:  180 VVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.541e-36
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR
Sbjct:  180 VVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 150.214 bits (378), Expect = 5.541e-36
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR
Sbjct:  180 VVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.541e-36
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VVMVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKGTKPWVSLPKGKGIKL+IIEEARKR
Sbjct:  180 VVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.105e-35
Identity = 69/76 (90.79%), Postives = 75/76 (98.68%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VVMVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKGTKPWVSLPKGKGIKL+IIE+ARKR
Sbjct:  180 VVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 6.126e-35
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VVMVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  180 VVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.328e-34
Identity = 67/76 (88.16%), Postives = 73/76 (96.05%), Query Frame = 3
Query:   12 VVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            VVMVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  180 VVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4X_DANRE (40S ribosomal protein S4, X isoform OS=Danio rerio GN=rps4x PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 4.400e-25
Identity = 49/79 (62.03%), Postives = 64/79 (81.01%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NREKH GSF+ +H++D++G+ FATRL N+F IGKG KPWVSLP+GKG++L+I EE  KR
Sbjct:  177 TGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEERDKR 255          
BLAST of EY756710 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 7.506e-25
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 3
Query:    3 TRPVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 239
            T  + MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L+I EE  KR
Sbjct:  177 TGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
The following BLAST results are available for this feature:
BLAST of EY756710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RS4_PRUAR5.541e-3692.1140S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_GOSHI5.541e-3694.7440S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS43_ARATH5.541e-3693.4240S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH5.541e-3693.4240S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH5.541e-3693.4240S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU2.105e-3590.7940S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_ORYSJ6.126e-3590.7940S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_MAIZE2.328e-3488.1640S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4X_DANRE4.400e-2562.0340S ribosomal protein S4, X isoform OS=Danio rerio... [more]
RS4Y1_MONDO7.506e-2563.2940S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-G09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756710 ID=EY756710; Name=EY756710; organism=Citrus sinensis; type=EST; length=527bp
CCACGCGTCCGGTTGTGATGGTGACTGGAGGGAGAAACAGAGGACGTGTT
GGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTGAAACTATCCA
CATCCAGGATGCTCTTGGTCATGAGTTTGCAACTCGTCTTGGAAATGTGT
TCACCATTGGCAAGGGTACAAAGCCATGGGTTTCTCTTCCCAAGGGCAAG
GGTATTAAACTATCCATCATTGAGGAGGCTAGGAAGAGACAAGCCCTGGC
GACTTCAGCAGCCGCCCAATGATAAACTTCATGGTCTTTGCGATATGGTT
TTAGAAAGTTTACTAGATGAAAGTTTTGCAGTTTGACACTTTTGTGATTG
CTTGTTTGATTTTCTTGTTGGTGATACTAGTTATCATAAAGTTTTGAGTT
TTAATACTGGTTTCAATTTTAGTTTTGTGATGAAACAGGTGACTCTTTTA
TTTTATCAGCGGCAATATTATTGGCAATGAATTTTTGGCCCAAAGTGACT
GACAAAAAAAAAAAAAAAAAAAAAAAA
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