EY756707

Overview
NameEY756707
Unique NameEY756707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length401
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:1360..1760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756707 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2
Query:   83 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 190
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of EY756707 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.940e-11
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   80 GGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 190
            GG+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of EY756707 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.309e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   83 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 196
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of EY756707 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.644e-11
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 2
Query:   83 GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 193
            G+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
The following BLAST results are available for this feature:
BLAST of EY756707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RCA_ARATH1.343e-1283.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.940e-1181.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.309e-1173.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ5.644e-1178.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-G06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756707 ID=EY756707; Name=EY756707; organism=Citrus sinensis; type=EST; length=401bp
CCACGCGTCCGTGAAGATGCTATCCAGAGTGGAAATTTCTATGGTTAGCC
CCCTTGATCCTAGCTAAGAGGCCTTGATGGGAGGCAAAGCAGCCCAGCAA
ATGAATGTTCCAGTTCCTGAAGGATGTACTGATCCTACTGCAGAAAACTT
TGATCCAACTGCAAGAAGTGATGATGGAAGCTGCCAATACACGCTTTAGG
CCTTGTTTCTAAGGGTTGAGAAGTGTCGCACTTTGCTTAGGATGTGAGAT
ATTCAAATAATATTGTTGCATTTTCATTTCTTTTTTAATCAGAAAGAATC
CTCTAATTTTGTGTTATATCACAACTCTTTATTCGATCTTTAAAAGGTGC
TCCTTCTTACCNTTANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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