EY756698

Overview
NameEY756698
Unique NameEY756698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13348 contig Csv1_Contig13348:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ARATH (Diaminopimelate epimerase, chloroplastic OS=Arabidopsis thaliana GN=DAPF PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.018e-81
Identity = 154/234 (65.81%), Postives = 174/234 (74.36%), Query Frame = 3
Query:  183 MAITTTRSLSVTPVTRRSATPINPXXXXXXXXXXTRPFGSNLTLKVPSFRVSASSMSSIHAPESASRTSFLDRRESGFLHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            M I    ++SV P +RR +   +              F      K PS RVSA++       E  S  SFLD++E+G LHFVKYHGLGNDFILVDNR+S+EP+I+ EQAAKLCDRNFG+GADGVIFAMPGVNGTDY MRIFNSDGSEPEMCGNGVRCFARFIAELENL GK SFT+HTGAGLIVPE  DDG+VKVDMG PILKA DVP KLS NK  +V ++EL VDGV WNVT
Sbjct:    1 MEIAAVSTVSVAPQSRRVSNAFSRNLGSVSSLSFGF-FEKEYCFKSPSLRVSAAASMDAVTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGVGADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDMGTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVT 233          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSJ (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DAPF PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.088e-70
Identity = 131/200 (65.50%), Postives = 158/200 (79.00%), Query Frame = 3
Query:  291 PFGSNLTLKV-PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            P    LTL+  P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI+VDNR+S  P+++PE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G  SF +HTGAGLI+PE  +DGKVKVDMG+PIL   D+P KL + K+ +V +++L VDG  W VT
Sbjct:   27 PSRRRLTLRGNPTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMVDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVT 225          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_ORYSI (Putative diaminopimelate epimerase, chloroplastic OS=Oryza sativa subsp. indica GN=DAPF PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.088e-70
Identity = 136/239 (56.90%), Postives = 171/239 (71.55%), Query Frame = 3
Query:  174 ASSMAITTTRSLSVTPVTRRSATPINPXXXXXXXXXXTRPFGSNLTLKV-PSFRVSASSMSSIHAPESASRTSFLDRRESG-FLHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            +++ A T T + +     + +ATP               P    LTL+  P+ R   ++M+ +  P SA+  +FL+RRES   LHFVKY GLGNDFI++DNR+S  P+++PE+AAKLCDRNFG+GADGVIF MPGVNG DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENL G  SF +HTGAGLI+PE  +DGKVKVDMG+PIL   D+P KL + K+ +V +++L VDG  W VT
Sbjct:    3 SATAAATATIAAAAAAAAKLAATPA------------PAPSRRRLTLRGNPTARRCVAAMA-VSTPRSAAAAAFLERRESERALHFVKYQGLGNDFIMMDNRDSAVPKVTPEEAAKLCDRNFGVGADGVIFVMPGVNGADYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGTHSFKIHTGAGLIIPEIQNDGKVKVDMGQPILSGPDIPTKLPSTKNEAVVQADLAVDGSTWQVT 228          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_TRIEI (Diaminopimelate epimerase OS=Trichodesmium erythraeum (strain IMS101) GN=dapF PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.276e-55
Identity = 104/154 (67.53%), Postives = 121/154 (78.57%), Query Frame = 3
Query:  423 FVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            F KYHGLGNDFIL+DNR+  +P ++PEQA +LCDRNFGIGADGVIFA+PGV  TDYTMRIFNSDGSEPEMCGNG+RC A+FIAELEN N K  + +HTGAG+IVPE   DG+V VDMG+P L AS++P  L AN D  V    L+V G  W VT
Sbjct:    5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIRCLAKFIAELEN-NNKTKYNIHTGAGIIVPELQGDGQVTVDMGQPRLLASEIPTTL-ANADDKVVDQLLEVGGKSWFVT 156          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF2_ANASP (Diaminopimelate epimerase 2 OS=Anabaena sp. (strain PCC 7120) GN=dapF2 PE=3 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 3.254e-51
Identity = 96/157 (61.15%), Postives = 120/157 (76.43%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            + F KYHGLGNDFIL+DNR S  P I+PE+A ++CDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE L+  K ++ +HT AG+I P+ + DG++KVDMG P L A ++P  L A  D  V    L+V+G  W VT
Sbjct:    3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAAFLADLEGLSRNKDTYRIHTLAGVITPQLTPDGQIKVDMGLPRLLAGEIPTTLGA-ADGKVINQPLEVEGQTWEVT 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SYNY3 (Diaminopimelate epimerase OS=Synechocystis sp. (strain PCC 6803) GN=dapF PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.786e-49
Identity = 99/156 (63.46%), Postives = 117/156 (75.00%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L F KYHGLGNDFILVDNR STEP ++P+QA +LCDR+FGIGADGVIFA+PG  GTDYTMRIFNSDGSEPEMCGNG+RC A+F+A+LE +  K ++ +HT AG+I P+   DG+VKVDMGEP L A  +P  L A     V    L V G  W VT
Sbjct:    3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTMRIFNSDGSEPEMCGNGIRCLAKFLADLEGVEEK-TYRIHTLAGVITPQLLADGQVKVDMGEPQLLAELIPTTL-APAGEKVVDLPLAVAGQTWAVT 156          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_NOSP7 (Diaminopimelate epimerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapF PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.974e-48
Identity = 95/157 (60.51%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN-GKQSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            + F KYHGLGNDFIL+DNR+S+ P ++PEQA +LCDR+FGIGADGVIFA+PG NGTDYTMRIFNSDGSEPEMCGNG+RC A F+A+LE  +  K S+ +HT  G++ P+   DG VKVDMG P L A ++P  L A  +  V    L+V G  W VT
Sbjct:    3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTMRIFNSDGSEPEMCGNGIRCLAGFLADLEGQSRNKDSYRIHTLGGVMTPQLLSDGLVKVDMGLPRLLAGEIPTTL-APVEEKVISVPLEVAGKTWEVT 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP2 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dapF PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.798e-48
Identity = 95/157 (60.51%), Postives = 114/157 (72.61%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK-QSFTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L F KY GLGNDFIL+DNR  T P ++PEQA +LCDR+FGIGADGVIFA+PG  G DYTMRIFNSDGSEPEMCGNG+RC ARFI  LE  N   +++++HT AG+I P    D  V+VDMGEPIL A+D+P  L  +   +V    L+V G  W VT
Sbjct:    3 LEFTKYQGLGNDFILLDNRQQTTPLVTPEQAIQLCDRHFGIGADGVIFALPGQAGADYTMRIFNSDGSEPEMCGNGIRCLARFIDHLEGGNAPGKTYSIHTLAGMIRPRLETDALVRVDMGEPILTATDIPTTLKDSNGQAV-NQPLEVAGKTWMVT 158          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SYNP6 (Diaminopimelate epimerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dapF PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.183e-47
Identity = 94/157 (59.87%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L F KYHGLGNDFILVDNR S EPR++PEQA ++CDRNFG+GADGVIFA+PG   +DY MRIFNSDGSEPEMCGNG+RC A+F++EL+   G QS + + TGAGLIVP  ++ G V VDMG   LK  ++P  L+   D  V +++L+V    W VT
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDMGPAYLKPVEIPTTLTGTGD-RVVEADLEVGDRPWKVT 156          
BLAST of EY756698 vs. ExPASy Swiss-Prot
Match: DAPF_SYNE7 (Diaminopimelate epimerase OS=Synechococcus elongatus (strain PCC 7942) GN=dapF PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.183e-47
Identity = 94/157 (59.87%), Postives = 117/157 (74.52%), Query Frame = 3
Query:  417 LHFVKYHGLGNDFILVDNRNSTEPRISPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQS-FTVHTGAGLIVPENSDDGKVKVDMGEPILKASDVPYKLSANKDXSVXKSELDVDGVKWNVT 884
            L F KYHGLGNDFILVDNR S EPR++PEQA ++CDRNFG+GADGVIFA+PG   +DY MRIFNSDGSEPEMCGNG+RC A+F++EL+   G QS + + TGAGLIVP  ++ G V VDMG   LK  ++P  L+   D  V +++L+V    W VT
Sbjct:    3 LQFAKYHGLGNDFILVDNRESGEPRLTPEQAVQVCDRNFGVGADGVIFALPGSGDSDYVMRIFNSDGSEPEMCGNGIRCLAKFLSELD--GGAQSRYRIATGAGLIVPTLTETGLVTVDMGPAYLKPVEIPTTLTGTGD-RVVEADLEVGDRPWKVT 156          
The following BLAST results are available for this feature:
BLAST of EY756698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 371
Match NameE-valueIdentityDescription
DAPF_ARATH3.018e-8165.81Diaminopimelate epimerase, chloroplastic OS=Arabid... [more]
DAPF_ORYSJ4.088e-7065.50Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_ORYSI4.088e-7056.90Putative diaminopimelate epimerase, chloroplastic ... [more]
DAPF_TRIEI8.276e-5567.53Diaminopimelate epimerase OS=Trichodesmium erythra... [more]
DAPF2_ANASP3.254e-5161.15Diaminopimelate epimerase 2 OS=Anabaena sp. (strai... [more]
DAPF_SYNY36.786e-4963.46Diaminopimelate epimerase OS=Synechocystis sp. (st... [more]
DAPF_NOSP71.974e-4860.51Diaminopimelate epimerase OS=Nostoc punctiforme (s... [more]
DAPF_SYNP29.798e-4860.51Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNP62.183e-4759.87Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNE72.183e-4759.87Diaminopimelate epimerase OS=Synechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-F08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756698 ID=EY756698; Name=EY756698; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGCGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTT
TCTCTTGCAACAAAACCTAGATTCTCTTTTCAACGCAACGGCACTGTATC
ACACAAACTAAACCAACCACCACATTTGACATTACTGCGACCAAGAGCAG
AAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACG
CGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAA
TCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCGGTT
CCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATG
AGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCG
CAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACG
ACTTCATTTTGGTTGATAACAGGAATTCTACCGAACCTAGGATAAGTCCG
GAGCAAGCGGCGAAGCTGTGCGATCGGAATTTCGGCATTGGGGCGGATGG
AGTGATCTTTGCCATGCCTGGAGTCAATGGCACTGATTATACAATGAGAA
TCTTCAATTCTGATGGTAGCGAGCCGGAGATGTGCGGTAATGGAGTTCGA
TGCTTTGCCAGATTCATTGCCGAGCTTGAAAATTTAAATGGGAAGCAAAG
TTTCACTGTCCACACTGGAGCTGGTCTCATTGTTCCAGAAAATTCAGATG
ACGGGAAGGTCAAAGTGGATATGGGTGAACCAATACTTAAAGCTTCAGAT
GTACCCTACAAGTTATCAGCAAATAAAGATNCATCTGTTGNTAAGTCAGA
ACTTGATGTTGATGGAGTTAAATGGAATGTGACTTTGCGTAG
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