EY728591

Overview
NameEY728591
Unique NameEY728591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12270 contig Csv1_Contig12270:40..477. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: ARGT_ECOLI (Lysine-arginine-ornithine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=argT PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 2.020e-17
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            ET+++G +  Y PF++KDA G+ VGFD D+G+ +C +M+V KC    SD+D +IP+L AKK D ++SSLSITD+R+Q
Sbjct:   26 ETVRIGTDTTYAPFSSKDAKGDFVGFDIDLGNEMCKRMQV-KCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQ 101
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: ARGT_SALTY (Lysine-arginine-ornithine-binding periplasmic protein OS=Salmonella typhimurium GN=argT PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.677e-17
Identity = 38/77 (49.35%), Postives = 58/77 (75.32%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            +T+++G +  Y PF++KDA G  +GFD D+G+ +C +M+V KC    SD+D +IP+L AKK D ++SSLSITD+R+Q
Sbjct:   26 QTVRIGTDTTYAPFSSKDAKGEFIGFDIDLGNEMCKRMQV-KCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQ 101
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: OCCT_RHIME (Octopine-binding periplasmic protein OS=Rhizobium meliloti GN=occT PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.498e-12
Identity = 30/77 (38.96%), Postives = 54/77 (70.13%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            +++ +  E AY P+N    +G + GF+ D+   LC +MKV KC++   +WDGIIP+L AKK+D +++++S+T +R++
Sbjct:   23 KSITIATEGAYAPWNFSGPNGKLDGFEIDLAKVLCERMKV-KCQIVAQNWDGIIPSLVAKKYDVIMAAMSVTPKRQE 98
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: OCCT_RHIRD (Octopine-binding periplasmic protein OS=Rhizobium radiobacter GN=occT PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 28/77 (36.36%), Postives = 52/77 (67.53%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            +++ +  E  Y P+N     G + GF+ D+ +ALC KMK  KC++   +WDGI+P+L  KK+D +++++S+T +R++
Sbjct:   23 KSITIATEGGYAPWNFSGPGGKLDGFEIDLANALCEKMKA-KCQIVAQNWDGIMPSLTGKKYDAIMAAMSVTPKRQE 98
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: OCCT_AGRT4 (Octopine-binding periplasmic protein OS=Agrobacterium tumefaciens (strain Ach5) GN=occT PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 28/77 (36.36%), Postives = 52/77 (67.53%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            +++ +  E  Y P+N     G + GF+ D+ +ALC KMK  KC++   +WDGI+P+L  KK+D +++++S+T +R++
Sbjct:   23 KSITIATEGGYAPWNFSGPGGKLDGFEIDLANALCEKMKA-KCQIVAQNWDGIMPSLTGKKYDAIMAAMSVTPKRQE 98
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: NOCT_AGRT5 (Nopaline-binding periplasmic protein OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=nocT PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.693e-12
Identity = 29/77 (37.66%), Postives = 52/77 (67.53%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            +++ +  E +Y P+N KDA G ++GFD D+G+ LC +M +E C+     WDGIIP+L A ++D +++++ I   R++
Sbjct:   29 KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIE-CKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREK 104
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: HISJ_SALTY (Histidine-binding periplasmic protein OS=Salmonella typhimurium GN=hisJ PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.656e-11
Identity = 31/77 (40.26%), Postives = 51/77 (66.23%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            + +++G +  Y PF +K+A G +VGFD D+   LC ++  + C    +  D +IP+L AKK D ++SSLSIT++R+Q
Sbjct:   26 QKIRIGTDPTYAPFESKNAQGELVGFDIDLAKELCKRINTQ-CTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQ 101
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: HISJ_ECOLI (Histidine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=hisJ PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 30/77 (38.96%), Postives = 51/77 (66.23%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            + +++G +  Y PF +K++ G +VGFD D+   LC ++  + C    +  D +IP+L AKK D ++SSLSIT++R+Q
Sbjct:   26 QNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQ-CTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQ 101
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: HISJ_ECOL6 (Histidine-binding periplasmic protein OS=Escherichia coli O6 GN=hisJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 30/77 (38.96%), Postives = 51/77 (66.23%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            + +++G +  Y PF +K++ G +VGFD D+   LC ++  + C    +  D +IP+L AKK D ++SSLSIT++R+Q
Sbjct:   26 QNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQ-CTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQ 101
[Close]
BLAST of EY728591 vs. ExPASy Swiss-Prot
Match: HISJ_ECO57 (Histidine-binding periplasmic protein OS=Escherichia coli O157:H7 GN=hisJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.826e-11
Identity = 30/77 (38.96%), Postives = 51/77 (66.23%), Query Frame = -2 
Query:    3 ETLKMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEKCEVYVSDWDGIIPALNAKKFDFLVSSLSITDERKQ 233
            + +++G +  Y PF +K++ G +VGFD D+   LC ++  + C    +  D +IP+L AKK D ++SSLSIT++R+Q
Sbjct:   26 QNIRIGTDPTYAPFESKNSQGELVGFDIDLAKELCKRINTQ-CTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQ 101
The following BLAST results are available for this feature:
BLAST of EY728591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ARGT_ECOLI2.020e-1751.95Lysine-arginine-ornithine-binding periplasmic prot... [more]
ARGT_SALTY7.677e-1749.35Lysine-arginine-ornithine-binding periplasmic prot... [more]
OCCT_RHIME1.498e-1238.96Octopine-binding periplasmic protein OS=Rhizobium ... [more]
OCCT_RHIRD5.693e-1236.36Octopine-binding periplasmic protein OS=Rhizobium ... [more]
OCCT_AGRT45.693e-1236.36Octopine-binding periplasmic protein OS=Agrobacter... [more]
NOCT_AGRT55.693e-1237.66Nopaline-binding periplasmic protein OS=Agrobacter... [more]
HISJ_SALTY1.656e-1140.26Histidine-binding periplasmic protein OS=Salmonell... [more]
HISJ_ECOLI2.826e-1138.96Histidine-binding periplasmic protein OS=Escherich... [more]
HISJ_ECOL62.826e-1138.96Histidine-binding periplasmic protein OS=Escherich... [more]
HISJ_ECO572.826e-1138.96Histidine-binding periplasmic protein OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-H08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728591 ID=EY728591; Name=EY728591; organism=Citrus sinensis; type=EST; length=438bp
GCCTGCTTGCGTTCATCGGTGATGGACAGCGAGGAGACCAGGAAGTCGAA
CTTCTTGGCGTTCAGGGCCGGGATGATGCCGTCCCAGTCCGAGACATACA
CTTCGCACTTCTCGACTTTCATCTTGGCGCACAGGGCGTCGCCGATGTCC
TTGTCGAAGCCGACAACGTTGCCGCTGGCATCTTTATTGTTGAACGGCGG
GTAGGCCGCTTCGATCCCCATTTTCAAAGTCTCGGCCATCGCCGTGGCGC
TGAACGCCATCGAAACGGCGGCAGCCAGGAGGAATTTTTTATAGTTCTGC
ATGCATGTTGCTCCGTTAGCGGTTGCTGGACATGAATTGTTTGCAGCGCG
CCGAAAGCGGGTTTTCAAACACCTGCTGTGGCGATCCTTGCTCTTCGACC
AGGCCCTGGTGCAGGAACACCACTTCACTGGACACCTG
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