EY756658

Overview
NameEY756658
Unique NameEY756658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5089 contig Csv1_Contig5089:205..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.497e-44
Identity = 88/122 (72.13%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   13 ATIAAVQPVT-IKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 375
            ATIAAVQP + +KGLGGSSL G KL +KP+RQ+ +PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA+++GD+
Sbjct:    5 ATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSASSTGDV 126          
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.193e-43
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 1
Query:   13 ATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 375
            ATIAAVQP   +KGLGGSSLAG KL +KP+RQ+ + KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA ++GD+
Sbjct:    5 ATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANSTGDV 126          
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.663e-42
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = 1
Query:   13 ATIAAVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 375
            AT+AAV+P   IKGLGGSSLAG KL++KP+R + +PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SAT++G++
Sbjct:    5 ATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATSTGEV 126          
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.314e-41
Identity = 81/121 (66.94%), Postives = 94/121 (77.69%), Query Frame = 1
Query:   13 ATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 375
            AT+AAVQP T+KGL GSS+AGTKL +KP RQ+ +  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y SA A  D+
Sbjct:    5 ATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 125          
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   13 ATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 375
            A++ AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+
Sbjct:    2 ASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.993e-36
Identity = 77/122 (63.11%), Postives = 90/122 (73.77%), Query Frame = 1
Query:   13 ATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 375
            A++ AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKR            S +AY SA+AS D+
Sbjct:    2 ASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASASPDL 123          
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.453e-35
Identity = 80/124 (64.52%), Postives = 95/124 (76.61%), Query Frame = 1
Query:   13 ATIAAV--QPVTIKGLGGSSLAGTKLTV-KPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 375
            A++AAV  +PV IKGL GSS++G KL V +P+ +++R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            S LAY SA+AS D+
Sbjct:    2 ASLAAVSVKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSASASPDL 123          
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.098e-34
Identity = 73/123 (59.35%), Postives = 89/123 (72.36%), Query Frame = 1
Query:   13 ATIAAVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 375
            A++ AVQP  +KGL GSS++G KL V+P+   +   + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKR            S +AY SA+AS D+
Sbjct:    2 ASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASASPDL 124          
BLAST of EY756658 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  148 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 255
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of EY756658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA8.497e-4472.13Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH7.193e-4371.31Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH4.663e-4268.85Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL2.314e-4166.94Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ4.993e-3663.11Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI4.993e-3663.11Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE1.453e-3564.52Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU2.098e-3459.35Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA7.016e-1491.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-B08-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756658 ID=EY756658; Name=EY756658; organism=Citrus sinensis; type=EST; length=565bp
CCACGCGTCCGTGCAACCATAGCTGCTGTGCAACCAGTCACCATCAAAGG
CCTTGGAGGCAGCTCTCTTGCTGGAACTAAGCTCACCGTCAAGCCAACTC
GCCAGAATTTGAGACCCAAAAGCTTCAAGGCTGGTGCTGTAGTGGCTAAG
TATGGTGATAAGAGTGTGTACTTTGATTTGGAGGATTTGGGCAACACTAC
GGGCCAGTGGGACTTGTACGGATCAGATGCTCCTTCACCGTACAACTCTC
TTCAGAGCAAGTTCTTTGAGACATTTGCAGCTCCATTCACCAAGAGAGGA
TTATTGCTCAAGTTCTTGATATTGGGAGGAGGTTCAACCCTTGCTTACTT
CAGTGCTACAGCTAGTGGTGACATTCTCCCAATCAAGAAGGGCCCTCAAC
TTCCACCAAAGCTCGGACCACGTGGCAAGATCTAAATTAGTTTTCAATCC
TCCTATTTTTAACTTTTCATTGTATGTATCTTCTTGTTATTGTAAACCTG
TAGGTTTGTCCAACATCCTACTTAAGACTTCCTTTGTTATTAATGCCAAT
ATATTTGCTTCANTT
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