EY756652

Overview
NameEY756652
Unique NameEY756652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:968..1568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756652 vs. ExPASy Swiss-Prot
Match: IDH6_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.128e-18
Identity = 44/57 (77.19%), Postives = 53/57 (92.98%), Query Frame = 2 
Query:   98 ALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 268
            ALLLS V MLRHL+L+ +A++I +AI++TIAEGKYRTADLGGSSTT+DFTKAICDHL
Sbjct:  318 ALLLSGVMMLRHLKLNKQAEQIHSAIINTIAEGKYRTADLGGSSTTTDFTKAICDHL 374
[Close]
BLAST of EY756652 vs. ExPASy Swiss-Prot
Match: IDH5_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.189e-17
Identity = 42/57 (73.68%), Postives = 53/57 (92.98%), Query Frame = 2 
Query:   98 ALLLSSVTMLRHLELHDKADRIQNAILSTIAEGKYRTADLGGSSTTSDFTKAICDHL 268
            ALLLS V MLRHL+ +++A++I +AI++TIAEGKYRTADLGGSSTT++FTKAICDHL
Sbjct:  318 ALLLSGVMMLRHLKFNEQAEQIHSAIINTIAEGKYRTADLGGSSTTTEFTKAICDHL 374
The following BLAST results are available for this feature:
BLAST of EY756652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IDH6_ARATH3.128e-1877.19Isocitrate dehydrogenase [NAD] catalytic subunit 6... [more]
IDH5_ARATH1.189e-1773.68Isocitrate dehydrogenase [NAD] catalytic subunit 5... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-011-A11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756652 ID=EY756652; Name=EY756652; organism=Citrus sinensis; type=EST; length=601bp
CCACGCGTCCGAATGTTGCGCCATTTGGAGCTCCATTGTTACCGAACTCA
ACAGCAAAGCAGTTGGATTTGCCAAATTCTTTCCAGCAATATCAGGTGCT
TTGCTGTTGAGTTCGGTAACAATGTTGCGCCATTTGGAGCTCCATGACAA
GGCTGATAGGATCCAAAATGCTATCCTGAGCACAATTGCAGAGGGGAAGT
ATCGAACTGCAGATCTTGGTGGCTCTTCAACGACATCAGATTTCACAAAG
GCAATCTGCGATCATCTTTAAATATTTCTTTCTACATAGAATTTGAATTC
GTGTTCAAGATTTACATTCTACCTTTCTTTTTTTGAGCAATGTCTCAAAT
TTGTTTTTTTCCCCCCTTTTTAAAGTGTTTTTCTTTGAGGGGAATAAGAC
CCATCACCTTGGTGACTATTTAGAAGTTTTTTTCTGATGAAACTGTTCAG
CCAGAGTGTATATGGCCGTCCTCAGAAAAGGTATTTATACGGCAATATTT
ATTTCCTCGCTGTCTGTGAAATTCCAAAAATTGAACTAACCGATCTTGAG
AAAATTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNA
A
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