EY756611

Overview
NameEY756611
Unique NameEY756611
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length310
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3673 contig Csv1_Contig3673:1..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756611 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3
Query:    3 RGDEELDTLIKGTIAGGGVIPHIHKSLINKSTKD 104
            RGDEELDTLIKGTIAGGGVIPHIHKSL+NK TKD
Sbjct:  103 RGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136          
BLAST of EY756611 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.751e-12
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 3
Query:    3 RGDEELDTLIKGTIAGGGVIPHIHKSLINKSTKD 104
            RGDEELDTLIKGTIAGGGVIPHIHKSLINK+TK+
Sbjct:  103 RGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136          
BLAST of EY756611 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.818e-12
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 3
Query:    3 RGDEELDTLIKGTIAGGGVIPHIHKSLINKSTKD 104
            RGDEELDTLIKGTIAGGGVIPHIHKSLINKS+K+
Sbjct:  104 RGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137          
BLAST of EY756611 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.152e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3
Query:    3 RGDEELDTLIKGTIAGGGVIPHIHKSLINKSTKD 104
            RGDEELDTLIKGTIAGGGVIPHIHKSLINKS K+
Sbjct:  101 RGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134          
BLAST of EY756611 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.964e-11
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 3
Query:    3 RGDEELDTLIKGTIAGGGVIPHIHKSLINKSTKD 104
            RGDEELDTLIKGTIAGGGVIPHIHKSLINK++K+
Sbjct:  105 RGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138          
BLAST of EY756611 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.566e-11
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 3
Query:    3 RGDEELDTLIKGTIAGGGVIPHIHKSLINKSTKD 104
            RGDEELDTLIKGTIAGGGVIPHIHKSLINK+ K+
Sbjct:  106 RGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139          
The following BLAST results are available for this feature:
BLAST of EY756611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
H2AV2_ARATH6.751e-1294.12Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AV1_ARATH6.751e-1294.12Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV3_ORYSJ8.818e-1294.12Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AV3_ARATH1.152e-1194.12Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV1_ORYSJ1.964e-1191.18Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ORYSJ2.566e-1191.18Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-F04-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756611 ID=EY756611; Name=EY756611; organism=Citrus sinensis; type=EST; length=310bp
TCCGTGGTGATGAAGAACTTGATACCCTGATCAAAGGAACCATCGCTGGT
GGCGGTGTCATCCCTCATATCCACAAATCACTAATCAACAAGTCAACCAA
GGACTAGTTTCAAGTGGATTATGGTTGCCTATAATGCGGGCAGAATCCTC
ATCCTGTGATCAGATTTATGGATTTGTTAACCCCCTGCTATTGAAGCAAG
GCCATACCTTGATGTCTTCTTATTTTTATTTGTGCTTGATCTTAGGTTAC
TGAACTTGGTATGCCTGTTATGACATGTGGATAATGACATCATTTGGCAA
TTTAANNNNN
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