EY756608

Overview
NameEY756608
Unique NameEY756608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756608_ssr513 microsatellite EY756608_ssr513:513..527. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13340 contig Csv1_Contig13340:1..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.687e-49
Identity = 92/111 (82.88%), Postives = 96/111 (86.49%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            IVK+FDD TRE+P GHCLVAGIKK P KVI KDSAKKTAK SRVKAFVKLV+YQHLMPTRYTLDVDLK  V  D LQSKDKK+ A KETKK LEERFKT KNRWFFTKLRF
Sbjct:   25 IVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 36.5798 bits (83), Expect = 2.687e-49
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            MV FLKPNK VILL GRYAG+
Sbjct:    1 MVKFLKPNKAVILLQGRYAGK 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.865e-47
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            I+KSFDD  R+RP GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+LQSKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct:   25 IIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 33.4982 bits (75), Expect = 1.865e-47
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            MV FLK NK VILL GRYAG+
Sbjct:    1 MVKFLKQNKAVILLQGRYAGK 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 7.611e-46
Identity = 85/111 (76.58%), Postives = 94/111 (84.68%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            I+KSFDD T +R  GHCLVAG+KK P KVI KDSAKKTAK SRVK F+KLV+YQHLMPTRYTLDVDLK V T D+L+SKDKK+ A KE K +LEERFKT KNRWFFTKLRF
Sbjct:   25 IIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 33.4982 bits (75), Expect = 7.611e-46
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            MV FLK NK VILL GRYAG+
Sbjct:    1 MVKFLKQNKAVILLQGRYAGK 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.648e-42
Identity = 81/111 (72.97%), Postives = 93/111 (83.78%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            IVKSFDD T E+  GHCLVAG+KK P KVI KDSAKKTAK SRVK F K+++YQH+MPTRYTLD+DLK VV+AD++ SKDKK+ A KE K + EERFKT KNRWFFTKLRF
Sbjct:   25 IVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135

HSP 2 Score: 28.8758 bits (63), Expect = 1.648e-42
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            MV  +KP K VILL GRY G+
Sbjct:    1 MVKCMKPGKAVILLQGRYTGK 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 7.252e-40
Identity = 79/115 (68.70%), Postives = 91/115 (79.13%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL----KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            IV++FD+ TR+RP GHCLVAGI + P KVI KDSAKK  K SRVKAF+KLV+Y H+MPTRYTLD DL    K VV AD LQ++DKK+ A + TK RL ERFKT KNRWFFTKLRF
Sbjct:   25 IVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKARLAERFKTGKNRWFFTKLRF 138

HSP 2 Score: 34.2686 bits (77), Expect = 7.252e-40
Identity = 16/21 (76.19%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            M  FLKPNK VILL G+YAGR
Sbjct:    1 MEKFLKPNKAVILLQGKYAGR 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.349e-31
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDLKVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            IV++FDD T  RP GH LV G++K P KV  + S KK AK S +K F+K V+Y HLMPTRYTLDVD K  V A++ ++  KK+ A KE KK LEE+FKT KNRWFFTKLRF
Sbjct:   25 IVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFK-GVAAEAQENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134

HSP 2 Score: 28.1054 bits (61), Expect = 1.349e-31
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            MV FLK  K V++L GR+AG+
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGK 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 8.797e-27
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 29.6462 bits (65), Expect = 8.797e-27
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 8.797e-27
Identity = 59/112 (52.68%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 29.6462 bits (65), Expect = 8.797e-27
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.941e-26
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            IVK+ DD T +RP  H LV+GI + P KV      KK AK S++KAFVK+ +Y HLMPTRY++D+ L K +V  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 29.6462 bits (65), Expect = 1.941e-26
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            M  F+KP K V++L GRYAGR
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGR 21
[Close]
BLAST of EY756608 vs. ExPASy Swiss-Prot
Match: RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.289e-26
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  146 IVKSFDDRTRERPNGHCLVAGIKK*PGKVIHKDSAKKTAK*SRVKAFVKLVSYQHLMPTRYTLDVDL-KVVVTADSLQSKDKKMIACKETKKRLEERFKTSKNRWFFTKLRF 478
            IVK+ DD T +RP  H LVAGI + P KV      KK AK S++K+FVK+ +Y HLMPTRY++D+ L K VV  D  +    K  A +E K + EER+KT KN+WFF KLRF
Sbjct:   25 IVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136

HSP 2 Score: 28.8758 bits (63), Expect = 3.289e-26
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 3 
Query:   84 MVTFLKPNKTVILL*GRYAGR 146
            M  F+KP K V++L GRY+GR
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGR 21
The following BLAST results are available for this feature:
BLAST of EY756608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA2.687e-4982.8860S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH1.865e-4778.3860S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH7.611e-4676.5860S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL271_ARATH1.648e-4272.9760S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_SOLTU7.252e-4068.7060S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL27_PYRST1.349e-3160.3660S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27_HIPCM8.797e-2752.6860S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE8.797e-2752.6860S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]
RL27_ICTPU1.941e-2650.8960S ribosomal protein L27 OS=Ictalurus punctatus G... [more]
RL27_RAT3.289e-2651.7960S ribosomal protein L27 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-010-E10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756608 ID=EY756608; Name=EY756608; organism=Citrus sinensis; type=EST; length=679bp
CCACGCGTCCGCACGTTGTCACCCTCTGCACAACACACAAAAACCCAGAG
AGAGTCGCGGGCGCGCGAGGAGTTTGACCCGAAATGGTGACGTTTCTGAA
ACCAAATAAGACCGTGATCCTTCTTTAGGGCCGTTACGCCGGCCGATTGT
GAAGTCGTTCGACGACAGGACCCGCGAGAGGCCGAACGGGCACTGTCTGG
TAGCGGGGATAAAGAAGTAACCGGGCAAAGTGATCCACAAGGACTCGGCG
AAGAAGACAGCGAAGTAGTCACGCGTCAAGGCCTTCGTCAAGTTGGTCAG
CTACCAGCACCTGATGCCCACGCGCTACACTCTCGACGTCGATTTGAAGG
TAGTCGTGACGGCTGATTCCCTCCAGAGCAAGGACAAGAAGATGATAGCT
TGCAAGGAGACCAAGAAACGCCTCGAGGAGAGGTTTAAGACTAGCAAGAA
TCGTTGGTTCTTTACTAAGCTCAGGTTTTAGATTTTTAACCAAAGGAAGA
AAACGACTTGTCGTTTTGTTTTGTTTTGTGTTATTGAAAACGCTTTAGTT
GTTAAAGTGCGAATTTTGAGATTTATGTAGTGTTTTGTGAACTTATTTTT
TTTCTGGATCTGGTACTATTTTTATGTGAAAAAAAAATCACGCTGCCGAC
AAAAAAATTGGTTCTCAAAANNNNANANN
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