EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata

Publication Overview
TitleEST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata
AuthorsChen C, Bowman KD, Choi YA, Dang PM, Rao MN, Huang S, Soneji JR, McCollum TG, Gmitter FGJ
TypeJournal Article
Journal NameTree genetics & genomes
Volume4
Issue1
Year2008
Page(s)1-10
CitationChen C, Bowman KD, Choi YA, Dang PM, Rao MN, Huang S, Soneji JR, McCollum TG, Gmitter FGJ. EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata. Tree genetics & genomes. 2008; 4(1):1-10.

Abstract

The segregation of 141 polymorphic expressed sequence tag-simple sequence repeat (EST-SSR) markers in an F1 intergeneric citrus population was studied to build the first extensive EST maps for the maternal sweet orange and paternal Poncirus genomes. Of these markers, 122 were found segregating in sweet orange, 59 in Poncirus, and 40 in both. Eleven linkage groups with 113 markers in sweet orange, 8 with 45 markers in Poncirus, and 13 with 123 markers in the cross pollinator (CP) consensus of both, were constructed. About 775.8 cM of sweet orange genome and 425.7 cM of Poncirus genome were covered. Through comparison of shared markers, three cases were found where two linkage groups in one map apparently were colinear with one group of the other map; Poncirus linkages Ar1a and Ar1b and consensus linkages CP1a and CP1b, were both collinear with one sweet orange linkage, Sa1, as were sweet orange Sa3a and Sa3b with Poncirus Ar3 and consensus CP3, and sweet orange Sa7a and Sa7b, and consensus CP7a and CP7b with Poncirus Ar7. These EST-SSR markers are particularly useful for constructing comparative framework maps for related genera because they amplify orthologous genes to provide anchor points across taxa. All SSR primers are freely available to the citrus community.
Features
This publication contains information about 77 features:
Feature NameUniquenameType
CX2040CX2040genetic_marker
CX4004CX4004genetic_marker
CX6020CX6020genetic_marker
CX0032CX0032genetic_marker
CX5F56CX5F56genetic_marker
CX0035CX0035genetic_marker
CX0013CX0013genetic_marker
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CX3001CX3001genetic_marker
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Pages

Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
SanfordSanfordbreeding_research_material
FiwickeFiwickecultivar
RubyRubybreeding_research_material
ArgentinaArgentinabreeding_research_material
Sanford_x_ArgentinaSanford_x_Argentinapopulation
Fiwicke_x_ArgentinaFiwicke_x_Argentinapopulation
Ruby_x_ArgentinaRuby_x_Argentinapopulation
Properties
Additional details for this publication include:
Property NameValue
Publication TypeJournal Article
Publication Date2008
Published Location|||
Language Abbreng
Publication Model[electronic resource].
URLhttp://dx.doi.org/10.1007/s11295-007-0083-3
KeywordsCitroncirus webberi, microsatellite repeats, expressed sequence tags, chromosome mapping, Citrus sinensis, Poncirus trifoliata, population genetics, genomics, citrus fruits, hybrids, genotype, DNA primers, genome, linkage (genetics), genetic polymorphism, genotyping
Cross References
This publication is also available in the following databases:
DatabaseAccession
AGL: USDA National Agricultural LibraryAGL:3979502