CX286793

Overview
NameCX286793
Unique NameCX286793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286793_ssr115 microsatellite CX286793_ssr115:115..124. BLAST: Citrus ESTs to Prunus persica proteins V1
CX286793_ssr194 microsatellite CX286793_ssr194:194..203. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11617 contig Ccv1_Contig11617:151..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_CHILA (Leukotriene A-4 hydrolase OS=Chinchilla lanigera GN=LTA4H PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.428e-16
Identity = 55/139 (39.57%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  100 TTHISLSLYFDFSSSTIHAAAILTLAFPHAG--PLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGR----HLIVTLSDHSSVLIV--FSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTPAAR 492
            T H+ L    DFSS  +   A LT+         L LDT++LTI +V                    KG      L + LS +  V+I   F TSP  SALQWL+P QT  K HP++++QCQAIH R+V PCQDTP+ +
Sbjct:   19 TKHLHLRCSVDFSSRALTGIAALTIQSQEDNLRSLVLDTKALTIEKVVINGQEVKYALGERQSY---KGSPMEISLPIALSKNQEVVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAVLPCQDTPSVK 154          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_MOUSE (Leukotriene A-4 hydrolase OS=Mus musculus GN=Lta4h PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.865e-16
Identity = 52/139 (37.41%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  100 TTHISLSLYFDFSSSTIHAAAILTLAFPHAG--PLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGR----HLIVTLSDHSSVLIV--FSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTPAAR 492
            T H+ L    DF+  T+   A LT+         L+LDT+ LTI +V                    KG      L + LS +  ++I   F TSP  SALQWL+P QT  K HP++++QCQAIH R++ PCQDTP+ +
Sbjct:   19 TQHLHLRCSVDFARRTLTGTAALTVQSQEENLRSLTLDTKDLTIEKVVINGQEVKYTLGESQGY---KGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQTSGKQHPYLFSQCQAIHCRAILPCQDTPSVK 154          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_HUMAN (Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 7.087e-16
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 1
Query:  100 TTHISLSLYFDFSSSTIHAAAILTLAFPHAG--PLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGR----HLIVTLSDHSSVLIV--FSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTPAAR 492
            T H+ L    DF+  T+   A LT+         L LDT+ LTI +V                    KG      L + LS +  ++I   F TSP  SALQWL+P QT  K HP++++QCQAIH R++ PCQDTP+ +
Sbjct:   19 TKHLHLRCSVDFTRRTLTGTAALTVQSQEDNLRSLVLDTKDLTIEKVVINGQEVKYALGERQSY---KGSPMEISLPIALSKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVK 154          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_BOVIN (Leukotriene A-4 hydrolase OS=Bos taurus GN=LTA4H PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.062e-15
Identity = 49/139 (35.25%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  100 TTHISLSLYFDFSSSTIHAAAILTLAFPHAG--PLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTL------SDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTPAAR 492
            T H+ L    DF+   +   A LT+         L LDT+ LTI +V                    KG  + ++L      +    + I F TSP  SALQWL+P QT  K HP++++QCQAIH R++ PCQDTP+ +
Sbjct:   19 TKHLHLRCSIDFTRRVLSGTAALTIQSQEDNLRSLILDTKDLTIEKVVINGQEVKYTLGERQSY---KGSPIEISLPIALCKNQEIVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAILPCQDTPSVK 154          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_CAVPO (Leukotriene A-4 hydrolase OS=Cavia porcellus GN=LTA4H PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 52/139 (37.41%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  100 TTHISLSLYFDFSSSTIHAAAILTLAFPHAG--PLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGR----HLIVTLSDHSSVLIV--FSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTPAAR 492
            T H+ L    DF+   +   A LT+         L LDT+ LTI +V                    KG      L + LS +  V+I   F TSP  SALQWL+P QT  K HP++++QCQAIH R+  PCQDTP+ +
Sbjct:   19 TKHLHLRCSVDFTRRALTGVAALTIQSQEDNLRSLILDTKDLTIEKVVINGQEVKYALGEKQSY---KGSPMEISLPIALSKNQEVVIEISFETSPKSSALQWLTPEQTSGKEHPYLFSQCQAIHCRAFLPCQDTPSVK 154          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_NEOFI (Leukotriene A-4 hydrolase OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_083260 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 51/150 (34.00%), Postives = 75/150 (50.00%), Query Frame = 1
Query:   58 PIDPHSFTESTHPLTTHISLS--LYFD---FSSSTIHAAAILTLAFPHAGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLI---VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            P DP++ +   + ++THI+ +  + FD    + S IH     T     +  + LDT  L I  V                      +  +   V L++   V I   T+   +ALQWL+P QT NK HP++++QCQAIHARS+FPCQDTP
Sbjct:    8 PRDPNTLSNYNNWVSTHITANFDILFDQRKLAGSVIHQFRSTTHG--ESNHIILDTNHLDIGSVKVNGQPSEWEYLPRLEPYGTPLKIKLDQGVKLNEMIEVDISVKTTEKCTALQWLTPAQTSNKKHPYMFSQCQAIHARSIFPCQDTP 155          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_ASPNC (Leukotriene A-4 hydrolase OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An05g00070 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  313 VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            V L++   V I   T+   +ALQWL+P QT NK HP++++QCQAIHARS+FPCQDTP
Sbjct:   99 VNLNETIDVEISVQTTEKCTALQWLTPAQTSNKKHPYMFSQCQAIHARSIFPCQDTP 155          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_EMENI (Leukotriene A-4 hydrolase OS=Emericella nidulans GN=AN5812 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  313 VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            V L++   V I   T+   +ALQWL+P QT NK HP++++QCQAIHARS+FPCQDTP
Sbjct:  100 VGLNEIIDVDIAVQTTKECTALQWLTPAQTSNKKHPYMFSQCQAIHARSIFPCQDTP 156          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_BOTFB (Leukotriene A-4 hydrolase OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_09514 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 49/160 (30.63%), Postives = 76/160 (47.50%), Query Frame = 1
Query:   34 ISTITTM-APIDPHSFTESTHPLTTHISLSLYFDFSSSTIHAAAILTLAF---PHAGPLSLDTRSLTIHQVXXXXXXXXXXXXXXXXXXXIKGRHLIVTLSDHSS------VLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            ++T++T+  P DP++ +   +  T H    L  DF+   +H    L L       +  + LDT  + +  V                     G  L V +   ++      + I  ST+   +ALQWL+P QT NK  P++++QCQAIH RS+FPCQDTP
Sbjct:    1 MATVSTINMPRDPNTLSNYNNWRTKHTIADLAIDFTKQRVHGTVTLQLESITDKESEEIILDTSFVDVQSVAVDGNKTGEWTLEKRIEPF--GTPLSVKIPGGAAKGTVIALAITLSTTDKCTALQWLTPAQTSNKKFPYMFSQCQAIHNRSIFPCQDTP 158          
BLAST of CX286793 vs. ExPASy Swiss-Prot
Match: LKHA4_ASPFU (Leukotriene A-4 hydrolase OS=Aspergillus fumigatus GN=AFUA_2G07520 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.521e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  313 VTLSDHSSVLIVFSTSPSFSALQWLSPPQTFNKLHPFVYTQCQAIHARSVFPCQDTP 483
            V L++   V I   T+   +ALQWL+P QT NK HP++++QCQAIHARS+FPCQDTP
Sbjct:   99 VKLNETIEVDISVQTTEKCTALQWLTPAQTSNKKHPYMFSQCQAIHARSIFPCQDTP 155          
The following BLAST results are available for this feature:
BLAST of CX286793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
LKHA4_CHILA1.428e-1639.57Leukotriene A-4 hydrolase OS=Chinchilla lanigera G... [more]
LKHA4_MOUSE1.865e-1637.41Leukotriene A-4 hydrolase OS=Mus musculus GN=Lta4h... [more]
LKHA4_HUMAN7.087e-1637.41Leukotriene A-4 hydrolase OS=Homo sapiens GN=LTA4H... [more]
LKHA4_BOVIN2.062e-1535.25Leukotriene A-4 hydrolase OS=Bos taurus GN=LTA4H P... [more]
LKHA4_CAVPO4.594e-1537.41Leukotriene A-4 hydrolase OS=Cavia porcellus GN=LT... [more]
LKHA4_NEOFI1.478e-1334.00Leukotriene A-4 hydrolase OS=Neosartorya fischeri ... [more]
LKHA4_ASPNC1.478e-1357.89Leukotriene A-4 hydrolase OS=Aspergillus niger (st... [more]
LKHA4_EMENI2.521e-1357.89Leukotriene A-4 hydrolase OS=Emericella nidulans G... [more]
LKHA4_BOTFB2.521e-1330.63Leukotriene A-4 hydrolase OS=Botryotinia fuckelian... [more]
LKHA4_ASPFU2.521e-1357.89Leukotriene A-4 hydrolase OS=Aspergillus fumigatus... [more]

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Properties
Property NameValue
Genbank descriptionC01001B01Rv Veg1 Citrus clementina cDNA clone C01001B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286793 ID=CX286793; Name=CX286793; organism=Citrus clementina; type=EST; length=492bp
ACACAGTCCTCCCTCACTGACCGGGTTAACTCAATTTCCACCATAACAAC
AATGGCACCGATCGACCCGCACTCGTTCACCGAGTCAACTCACCCGCTGA
CCACACACATCTCCCTCTCTCTCTACTTCGACTTCTCTTCATCCACCATC
CACGCCGCAGCCATCCTCACCCTCGCCTTCCCACACGCCGGCCCTCTCTC
TCTGGACACCCGCTCCCTCACCATCCACCAAGTACTCGACCCCCAAACCC
TAACCCCACTCCCCTTCACTCTCTCCCCAACCGACGACCCAATCAAAGGC
CGCCACCTCATCGTCACGCTCTCCGATCACTCCTCTGTACTCATCGTCTT
CTCCACCTCCCCCTCTTTCTCCGCCCTCCAGTGGCTCTCCCCGCCGCAGA
CCTTCAACAAACTCCACCCCTTCGTCTACACACAGTGCCAGGCGATTCAC
GCGCGGTCGGTGTTCCCGTGCCAAGACACCCCCGCGGCGCGT
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