CX286802

Overview
NameCX286802
Unique NameCX286802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286802_ssr61 microsatellite CX286802_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNFLRDVQITIEDFFKD 528
            YE+LGV  +AT DEIK+AYR+L  +YHPD+NK+P+A EKF  I  AY  L + + R +YD      DFS   G  Q       + FG+  R+ +   E+FF D
Sbjct:    8 YEILGVPRNATQDEIKQAYRRLVRQYHPDLNKDPSAHEKFKEINEAYEVLSDPQKRAQYDQFGHVGDFS-GYGDFQGGWQPGGFDFGDLGRNFEDIFENFFGD 109          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_BACP2 (Chaperone protein dnaJ OS=Bacillus pumilus (strain SAFR-032) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.514e-17
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YEVLGV+ SA+ DEIK+AYRKL+ KYHPD+NKE  ++EKF  +K AY TL + + R +YD    T D +   G        +F GFG F
Sbjct:    7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRSQYDQFGHT-DPNQGFGGGGFGGGGDFGGFGGF 94          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 49/97 (50.52%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNK-EPNAEEKFMRIKHAYNTLLNSESRRKYD-------SGNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YE+LGVA +AT +EIK+AYRKLA KYHPDVNK +PNA EKF  I  AY  L + E R +YD        GN      +  G   N +D  F GFG F
Sbjct:    6 YEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQFGHAGVDGNFAGQGGFGGGAGINFED-IFSGFGGF 101          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDEEFYGFGNF 486
            YE+LGV+ +AT +EIK+AYRKL+ KYHPD+NKEP+A EKF  IK AY  L + + R  YD  G+   +  +    S +     F GFG F
Sbjct:    7 YEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGHADPNQGFGGFRSDDFDFGGFSGFGGF 96          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_COXBU (Curved DNA-binding protein OS=Coxiella burnetii GN=cbpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS 402
            Y++LGV+  ATADEIK++YRKLA KYHPDV+ EPNAEEKF ++K AY  L + E R+ YD+
Sbjct:    7 YKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVLKDVEKRKAYDA 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_COXBR (Curved DNA-binding protein OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=cbpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS 402
            Y++LGV+  ATADEIK++YRKLA KYHPDV+ EPNAEEKF ++K AY  L + E R+ YD+
Sbjct:    7 YKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVLKDVEKRKAYDA 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: CBPA_COXBN (Curved DNA-binding protein OS=Coxiella burnetii (strain Dugway 5J108-111) GN=cbpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS 402
            Y++LGV+  ATADEIK++YRKLA KYHPDV+ EPNAEEKF ++K AY  L + E R+ YD+
Sbjct:    7 YKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVLKDVEKRKAYDA 67          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRJ (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFG 480
            Y++LGV+  A+  +IKRAYR+LA KYHPDVN EP AEEKF +I  AY TL +S+ R +YD          S GP Q A  + F GFG
Sbjct:    7 YDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQFG-------SAGP-QGAGGQGFGGFG 85          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRD (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain DSM 20016) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDSGNRTSDFSYSTGPSQNAQDEEFYGFG 480
            Y++LGV+  A+  +IKRAYR+LA KYHPDVN EP AEEKF +I  AY TL +S+ R +YD          S GP Q A  + F GFG
Sbjct:    7 YDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQFG-------SAGP-QGAGGQGFGGFG 85          
BLAST of CX286802 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOKA (Chaperone protein dnaJ OS=Geobacillus kaustophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.235e-16
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  220 YEVLGVAPSATADEIKRAYRKLALKYHPDVNKEPNAEEKFMRIKHAYNTLLNSESRRKYDS-GNRTSDFSYSTGPSQNAQDE--EFYGFGNF 486
            YE+LGV+ +AT DEIK+AYRKL+ +YHPDVNK P+A EKF  IK AY  L + E R +YD  G+   + ++  G  Q    +   F GFG F
Sbjct:    7 YEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAPDAAEKFKEIKEAYEVLSDDEKRARYDRFGHADPNETFGGGGFQGGGFDFGGFSGFGGF 98          
The following BLAST results are available for this feature:
BLAST of CX286802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
DNAJ_DICT62.241e-1743.69Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]
DNAJ_BACP28.514e-1749.44Chaperone protein dnaJ OS=Bacillus pumilus (strain... [more]
DNAJ_CARHZ1.452e-1650.52Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DNAJ_GEOSW2.477e-1647.78Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
CBPA_COXBU2.477e-1662.30Curved DNA-binding protein OS=Coxiella burnetii GN... [more]
CBPA_COXBR2.477e-1662.30Curved DNA-binding protein OS=Coxiella burnetii (s... [more]
CBPA_COXBN2.477e-1662.30Curved DNA-binding protein OS=Coxiella burnetii (s... [more]
DNAJ_LACRJ3.235e-1651.72Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_LACRD3.235e-1651.72Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_GEOKA3.235e-1648.91Chaperone protein dnaJ OS=Geobacillus kaustophilus... [more]

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Properties
Property NameValue
Genbank descriptionC01001B11Rv Veg1 Citrus clementina cDNA clone C01001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286802 ID=CX286802; Name=CX286802; organism=Citrus clementina; type=EST; length=555bp
GACAACACGCTTGTCTATCTCCCTCATCTGTTCGCAAAATCTCCTCTTTT
TCACTTTCAGAAACAAACAAACTTCACAGTAACAATACCCAGTTGCAGAT
TTAGCTATGGTGATGAATTTGGTGTCCTCTTAGTTAGTCCGCAGCCTTTT
AGAAATTTTAAGAAGAAGAGGAGAAGCAATTTTAGTACCCTTTTGAGGGC
AAGTCGCAGAGAGTCCCCTTACGAGGTTTTGGGCGTGGCTCCATCTGCGA
CTGCTGATGAAATCAAAAGGGCTTATCGGAAACTTGCTTTGAAGTATCAC
CCTGACGTTAATAAAGAGCCAAATGCAGAGGAGAAATTTATGAGGATTAA
GCATGCATACAATACATTGCTGAATTCTGAGTCACGGAGGAAATATGACT
CTGGAAATCGCACATCAGATTTTTCCTACTCCACTGGCCCAAGCCAAAAT
GCGCAGGATGAAGAATTTTACGGATTTGGTAATTTTTTGAGGGATGTCCA
AATAACAATAGAGGACTTTTTCAAAGATCTTCAAGAAGAATTCCAGAATT
GGGAA
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