CX286837

Overview
NameCX286837
Unique NameCX286837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length282
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10219 contig Ccv1_Contig10219:36..317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286837 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.914e-17
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   76 MASHSALAPSRILAITRIPSKTTHSFPTQCSTKRLDVAEFAGLRANAGATYSTGARDASFFDAVTAQLT 282
            MA+H+ALA +RI   TR PSKT+HSFP+QC++KRL+V EF+GL++ +  +Y   ARD+SF+D V AQLT
Sbjct:    1 MATHAALASTRIPTNTRFPSKTSHSFPSQCASKRLEVGEFSGLKSTSCISYVHSARDSSFYDVVAAQLT 69          
BLAST of CX286837 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.155e-14
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   76 MASHSALAPSRILAITRIPSKTT--HSFPTQCSTKRLDVAEFAGLRANAGATYSTGARDASFFDAVTAQLT 282
            MASH+ALAPSRI A TR+ SK +  +SF TQCS KRLDVA+F+GLR++   T++   R+ASF D + AQLT
Sbjct:    1 MASHAALAPSRIPASTRLASKASQQYSFLTQCSFKRLDVADFSGLRSSNSVTFT---REASFHDVIAAQLT 68          
BLAST of CX286837 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   76 MASHSALAPSRILAITRIPSKTT-HSFPTQCSTKRLDVAEFAGLRANAGATYSTGARDASFFDAVTAQL 279
            MA+H+ALA SRI    R+ SK+  HSFP QCS+KRL+VAEF+GLR       S+   +ASFFDAV AQ+
Sbjct:    1 MATHAALAVSRIPVTQRLQSKSAIHSFPAQCSSKRLEVAEFSGLR------MSSIGGEASFFDAVAAQI 63          
The following BLAST results are available for this feature:
BLAST of CX286837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
G3PB_PEA6.914e-1757.97Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL7.155e-1459.15Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH1.948e-1156.52Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
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Properties
Property NameValue
Genbank descriptionC01001F03Rv Veg1 Citrus clementina cDNA clone C01001F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286837 ID=CX286837; Name=CX286837; organism=Citrus clementina; type=EST; length=282bp
ACCGCATAAATAGCTAGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAG
CAAATCATCAACTAAGCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTC
CCTCAAGAATCCTGGCCATCACTAGGATTCCATCCAAGACTACTCACTCT
TTTCCCACTCAATGCTCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGG
CCTACGAGCAAATGCAGGCGCGACATACTCCACTGGTGCTAGAGATGCAT
CCTTCTTTGATGCTGTGACTGCTCAACTTACT
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