CX286850

Overview
NameCX286850
Unique NameCX286850
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig55 contig Ccv1_Contig55:5..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 3.794e-42
Identity = 81/129 (62.79%), Postives = 99/129 (76.74%), Query Frame = 1
Query:   79 MPEKITAENILDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPR 465
            MP+K   E+++ +LV+  ++ VQK K               RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR
Sbjct:    1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPR 128          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.787e-23
Identity = 49/84 (58.33%), Postives = 61/84 (72.62%), Query Frame = 1
Query:  211 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++P K+P
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIP 134          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.499e-22
Identity = 43/84 (51.19%), Postives = 61/84 (72.62%), Query Frame = 1
Query:  211 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+SP K+P
Sbjct:   72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIP 155          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.827e-21
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 1
Query:  211 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++SP K+P
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIP 151          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.224e-21
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  211 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  ++P
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIP 134          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.962e-20
Identity = 49/126 (38.89%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  100 ENILDNLVETI-----SDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            E+IL+ +VE I     S  +                   +  RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P
Sbjct:    9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIP 134          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.925e-18
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  211 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++SP  +P
Sbjct:   47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIP 130          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.027e-15
Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  211 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIP 105          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.027e-15
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  211 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKV 459
            R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+SP  +
Sbjct:   53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENM 132          
BLAST of CX286850 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  211 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVP 462
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLP 107          
The following BLAST results are available for this feature:
BLAST of CX286850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RTNLH_ARATH3.794e-4262.79Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH8.787e-2358.33Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH1.499e-2251.19Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH2.827e-2147.62Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH8.224e-2152.38Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH6.962e-2038.89Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH2.925e-1847.62Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH3.027e-1540.48Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH3.027e-1544.58Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH2.030e-1136.90Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01001G05Rv Veg1 Citrus clementina cDNA clone C01001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286850 ID=CX286850; Name=CX286850; organism=Citrus clementina; type=EST; length=466bp
AAAATCTTCACGGCCACAACTCCAATCATCTACTCAACAGACCCCATTTT
TTTCCTTTTTTCTTGAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAG
AGAACATTTTGGACAACCTTGTGGAAACCATTTCAGATAAGGTTCAAAAG
CAGAAAGCTGTATCATTTTTTGAGGAAGAGACATCAAGCTCAGTCACTGC
TCGTTTCAATCGGCTGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGG
GCGGTGGAAAATCTGCTGATGTTTTGTTATGGAGGAACAAGAAGATATCA
GCCAGTGTATTAATGGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCT
TAACTACCATTTTCTGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGC
TTGCTCAATTTTTTTGGGTAAACATTTCGGGCTTATTTAACAGATCACCA
TCAAAAGTTCCCCGCT
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