CX286851

Overview
NameCX286851
Unique NameCX286851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286851 vs. ExPASy Swiss-Prot
Match: Y1934_ARATH (Uncharacterized protein At1g09340, chloroplastic OS=Arabidopsis thaliana GN=At1g09340 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.082e-61
Identity = 109/119 (91.60%), Postives = 116/119 (97.48%), Query Frame = -2 
Query:  221 VLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTYRKQADFSTDDMILGKKLVLQ 577
            VLGNEKASR++FNISGEKYVTFDGLA+ACAKA GFPEPE+VHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGL DSYNLDFGRGT+RK+ADF+TDDMIL KKLVLQ
Sbjct:  260 VLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKEADFTTDDMILSKKLVLQ 378
[Close]
BLAST of CX286851 vs. ExPASy Swiss-Prot
Match: Y3314_ARATH (Uncharacterized protein At3g63140, chloroplastic OS=Arabidopsis thaliana GN=At3g63140 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = -2 
Query:  242 VLGNEKASRQVFNISGEKYVTFDGLARACAKAAGFPEPELVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLADSYNLDFGRGTYRKQADFSTDDMIL 577
            V   E AS  +FN   ++ VT DG+A+ CA AAG    E+VHY+PK      KKAF FR+ HF+A    AK +LGW+ + +L E L + +      G  +K+  F  DD IL
Sbjct:  287 VANPEAASGNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLGWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKIL 397
The following BLAST results are available for this feature:
BLAST of CX286851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1934_ARATH2.082e-6191.60Uncharacterized protein At1g09340, chloroplastic O... [more]
Y3314_ARATH3.480e-1641.07Uncharacterized protein At3g63140, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC01001G06Rv Veg1 Citrus clementina cDNA clone C01001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286851 ID=CX286851; Name=CX286851; organism=Citrus clementina; type=EST; length=578bp
GAACTAGTCTCGAGTTTTTTTTTTTTTTTTTCGAGAAAATGACTTGCATT
GATTTATTAATTCTCATACAAGGTTTACGATACATGTGGAACTCAAATAT
TTTCAGTTGAAACCATAAACCATGAACAGTAGGCAGCCTAGAGCTTGGAT
GAAAATGATCAACAAAGTAACTATAAGGAGGGAAAAAAAAAACCCTAGGA
AATGTGTGAATGAACTAGGCCTGAAGAACGAGTTTCTTGCCGAGAATCAT
GTCATCTGTGGAGAAATCAGCCTGTTTCCTGTATGTGCCCCTGCCAAAGT
CTAGGTTGTATGAGTCTGCAAGACCTTCCACCAGGTCAAACTCAGGTTTC
CATCCGAGCACATGCTTTGCCTTCTCAACTGACGCAAAGAAATGCTGGTC
CCTGAATGGAAAAGCCTTCTTTTTACCAAAGTCAAACTCTTTGGGGTTGT
AGTGCACAAGTTCAGGCTCCGGAAATCCAGCAGCCTTTGCACATGCCCTG
GCTAATCCATCAAAGGTGACATACTTCTCTCCTGAGATGTTGAATACCTG
CCTGCTGGCTTTTTCATTACCAAGAACC
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