CX286863

Overview
NameCX286863
Unique NameCX286863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286863_ssr165 microsatellite CX286863_ssr165:165..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13851 contig Ccv1_Contig13851:26..544. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286863 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.301e-28
Identity = 57/60 (95.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:  338 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 517
            IKEQYLG KKPKKRVI+PSEKFRFSFDWENTEDTSRDMN LYQNPHEAQLLFGRGFRAGM
Sbjct:  163 IKEQYLGGKKPKKRVIRPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGM 222          
BLAST of CX286863 vs. ExPASy Swiss-Prot
Match: RH21_ORYSJ (DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp. japonica GN=Os03g0708600 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.909e-26
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 2
Query:  338 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGM 517
            IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMN+LYQ+PHEA+LL+GRGF AG+
Sbjct:  165 IKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQSPHEARLLYGRGFLAGI 224          
BLAST of CX286863 vs. ExPASy Swiss-Prot
Match: RH44_ARATH (Putative DEAD-box ATP-dependent RNA helicase 44 OS=Arabidopsis thaliana GN=RH44 PE=5 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.890e-17
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 2
Query:  338 IKEQYLGSKKPKKRVI-KPSEKFRFSFDWENTEDT-SRDMNALYQNPHEAQLLFGRGFRAGM 517
            +KEQYLG+ KPKKRVI KPS+ FRF  DWENTEDT S +MN LYQNPHEAQ LFGRG RAG+
Sbjct:  117 MKEQYLGTTKPKKRVIMKPSKNFRF--DWENTEDTLSGEMNVLYQNPHEAQPLFGRGCRAGI 176          
The following BLAST results are available for this feature:
BLAST of CX286863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RH21_ARATH5.301e-2895.00DEAD-box ATP-dependent RNA helicase 21 OS=Arabidop... [more]
RH21_ORYSJ2.909e-2690.00DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sa... [more]
RH44_ARATH1.890e-1775.81Putative DEAD-box ATP-dependent RNA helicase 44 OS... [more]
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Properties
Property NameValue
Genbank descriptionC01001H07Rv Veg1 Citrus clementina cDNA clone C01001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286863 ID=CX286863; Name=CX286863; organism=Citrus clementina; type=EST; length=519bp
AAAACCCTAACCCTAGAAAAAAAAAATCAATCAAAACATGAATCGATTAG
TGGACGAAGGCGGCAGCAACAACAAGAAGCCCCTGTTCTTGACGAAAGCG
CAACGCGAGCAATTAGCCCTCGAACGCCGCCAAGAACAAATCGCCCAGCA
AAAACGCCGCCAAGAACAACAACAACAACTCCTCTCTCAGCCCCAAACCC
ACGGCAGAAACTCTTCCGACTCGCGCGACCGCGAGCGTGAGCGACACCGC
CGTGAGCGTGAAGAAGAAGCGAAGGCGAGGGAGCGTGCGCGGTTGGAGAA
ATTAGCTGAGCGTGAGCGGGAGAGAGAATTGGAGCTGATCAAAGAGCAGT
ATTTGGGATCTAAAAAGCCGAAGAAAAGGGTCATTAAGCCGAGCGAGAAG
TTTAGGTTTTCGTTTGACTGGGAAAATACCGAGGACACATCACGTGACAT
GAATGCTCTGTATCAAAACCCTCACGAGGCTCAGCTTTTGTTTGGGAGAG
GGTTTCGTGCTGGGATGGA
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