CX286867

Overview
NameCX286867
Unique NameCX286867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:170..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_RAT (Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.076e-52
Identity = 100/195 (51.28%), Postives = 132/195 (67.69%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWK-LYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+W+   +G WK +    L+ H+DWVR+VAWAP++
Sbjct:   33 SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSI 224          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_MOUSE (Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3)

HSP 1 Score: 203.756 bits (517), Expect = 5.076e-52
Identity = 100/195 (51.28%), Postives = 132/195 (67.69%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWK-LYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+W+   +G WK +    L+ H+DWVR+VAWAP++
Sbjct:   33 SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWKEE--QKLEAHSDWVRDVAWAPSI 224          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_HUMAN (Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.131e-51
Identity = 99/195 (50.77%), Postives = 132/195 (67.69%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWK-LYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIW+E N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T   +G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + +++  SGGCDN +K+WK   +G WK +    L+ H+DWVR+VAWAP++
Sbjct:   33 SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSI 224          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_BOVIN (Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.929e-51
Identity = 101/195 (51.79%), Postives = 131/195 (67.18%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFL-DPVQKLCSGGCDNTVKVWK-LYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD S+KI  V N     +A L GH+G VW+VAWAHP +G+ILASCS+D  VIIWKE N   W K H    H SSVNS+ WAPH+ GL LACGSSDG IS+ T    G W+  +I+ AH +G  +VSWAP+  PG+L+   SG   + ++K  SGGCDN +K+WK   +G WK +    L+ H+DWVR+VAWAP++
Sbjct:   33 SDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWKEENGT-WEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSI 224          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_DICDI (Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.022e-49
Identity = 93/194 (47.94%), Postives = 123/194 (63.40%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG---FLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD  IKI  VG    QHL  L GH+G VW+VAWAHPKFG ILAS S+D  VI+WKE  +N W   H +  H+ SVNSI WAPHE GL LAC SSDG++++     +  W+  +  Q   +GV SVSW+P+  P +LV S       P++++ +G CDN +K++K     W +D    L+ H DWVR+VAWAPN+
Sbjct:   31 SDKMIKIFDVGGENPQHLVDLRGHEGPVWQVAWAHPKFGKILASASYDRKVIVWKEVGNNSWSIIHQYAGHELSVNSISWAPHEFGLSLACASSDGSVTIHNYN-NNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFKNVEDKWILD--KQLEDHKDWVRDVAWAPNI 221          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_USTMA (Protein transport protein SEC13 OS=Ustilago maydis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.162e-46
Identity = 100/229 (43.67%), Postives = 130/229 (56.77%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAK-LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-----------------------GNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV------------GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD ++K+  + N T    A+ L GH+G VW+VAWAHP FG ILASCS+DG V+IWK+                        ++  W  IK+H    H +SVNSI WAPHELG  LAC SSDGN+SV T   DG W    +  AHPVG  +VSWAP+  PG+L+             +G    V++  S GCDNTVK+W+      +     ALQ H+DWVR+VA+APN+
Sbjct:   46 SDRTVKVFDIVNGTPSTTAETLHGHQGPVWQVAWAHPTFGDILASCSYDGKVVIWKDNGAGASIGASAPYGSQSAYGAPTSSAGGWTKIKEHTL--HTASVNSISWAPHELGSILACASSDGNVSVLTFNNDGTWAVDLV-AAHPVGCNAVSWAPAVVPGSLISAQSVGANAGAASNGEAKLVKRFASAGCDNTVKIWEFSQEANRFVEVEALQGHSDWVRDVAFAPNV 271          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.088e-44
Identity = 88/192 (45.83%), Postives = 116/192 (60.42%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD +IK+  + NN    L  L GH G VW++ WAHPKFG+ILAS S+DG VI+W+E G     + DH    H++SVN++ WAPHE G  LAC SSDG +SV   + DG  DT RI  AH  G  +V W+P +  G++VG       +KL + GCDN VK+W    G+        L  H DW R+VAWAP++
Sbjct:   29 SDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRETGGVWSELMDHT--AHQASVNAVSWAPHEYGALLACASSDGKVSVLEFKDDGSCDT-RIFTAHEPGCNAVCWSPPSLSGSVVGQSPAAGPKKLATAGCDNLVKIWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSV 217          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_COCIM (Protein transport protein SEC13 OS=Coccidioides immitis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.480e-43
Identity = 93/198 (46.97%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNS-----NEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALV-GSGFLDPVQKLCSGGCDNTVKVWKLYNGIWKMDCFS-ALQMHTDWVRNVAWAPNL 575
            SD +IKI  +  ++ + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E +S     + W +   F  H +SVN + WAPHELG  LAC SSDG++SV   R D  W T +I  AH +GV SVSWAP+ APG+++  +     +++  +GG DN VK+W  YN   K    S  L+ HT WVR+V+W+P++
Sbjct:   31 SDKTIKIFELEGDSHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQSSAASTGSSWSRVFDFSLHTASVNMVSWAPHELGCVLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSVSWAPAAAPGSVISATPSTGQIRRFVTGGSDNLVKIWD-YNPETKTYATSHVLEGHTGWVRDVSWSPSI 225          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.480e-43
Identity = 93/201 (46.27%), Postives = 124/201 (61.69%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ--KLCSGGCDNTVKVWKLYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD +IKI  +   T + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ APG+L+ S    P Q  +  +GG DN +K+W         +    L+ H+DWVR+VAW+P++
Sbjct:   32 SDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISSN-PGPGQQRRFVTGGSDNLLKIWDYNPETKTYNNTQTLEGHSDWVRDVAWSPSV 229          
BLAST of CX286867 vs. ExPASy Swiss-Prot
Match: SEC13_ASPFU (Protein transport protein sec13 OS=Aspergillus fumigatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.934e-43
Identity = 92/201 (45.77%), Postives = 124/201 (61.69%), Query Frame = 3
Query:    3 SDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ--KLCSGGCDNTVKVWKLYNGIWKMDCFSALQMHTDWVRNVAWAPNL 575
            SD +IKI  +   T + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ +PG+L+ S    P Q  +  +GG DN +K+W         +    L+ H+DWVR+VAW+P++
Sbjct:   30 SDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGSTWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLISSN-PGPGQQRRFVTGGSDNLLKIWDYNPESKTYNLSQTLEGHSDWVRDVAWSPSI 227          
The following BLAST results are available for this feature:
BLAST of CX286867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SEC13_RAT5.076e-5251.28Protein SEC13 homolog OS=Rattus norvegicus GN=Sec1... [more]
SEC13_MOUSE5.076e-5251.28Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=... [more]
SEC13_HUMAN1.131e-5150.77Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=... [more]
SEC13_BOVIN1.929e-5151.79Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 ... [more]
SEC13_DICDI4.022e-4947.94Protein transport protein SEC13 OS=Dictyostelium d... [more]
SEC13_USTMA4.162e-4643.67Protein transport protein SEC13 OS=Ustilago maydis... [more]
SEC13_SCHPO5.088e-4445.83Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_COCIM1.480e-4346.97Protein transport protein SEC13 OS=Coccidioides im... [more]
SEC13_ASPNC1.480e-4346.27Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_ASPFU1.934e-4345.77Protein transport protein sec13 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionC01002A02Rv Veg1 Citrus clementina cDNA clone C01002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286867 ID=CX286867; Name=CX286867; organism=Citrus clementina; type=EST; length=575bp
GTTCGGATTACTCAATTAAGATCATTGGTGTGGGCAATAACACCTCTCAG
CATCTCGCAAAGCTTAGTGGTCATAAAGGTGCTGTTTGGGAGGTGGCTTG
GGCTCACCCAAAATTTGGGTCTATACTTGCATCCTGTTCTTTTGACGGGA
CTGTCATAATATGGAAGGAGGGTAACAGTAATGAGTGGATCAAAGATCAT
GTTTTTGAGGACCACAAATCGTCAGTCAATTCGATTGATTGGGCGCCTCA
TGAGCTCGGTCTATGTTTGGCTTGTGGTTCGTCAGATGGGAACATATCAG
TTTTTACGGCTAGAGCTGATGGCGGCTGGGATACATCTAGGATTGACCAA
GCTCATCCGGTTGGTGTGACTTCAGTTTCATGGGCCCCATCAACAGCTCC
CGGTGCACTTGTGGGTTCTGGTTTTCTTGACCCAGTTCAGAAGCTTTGTT
CAGGTGGTTGTGATAATACCGTGAAGGTGTGGAAGCTGTACAATGGAATT
TGGAAGATGGACTGCTTTTCAGCTCTTCAAATGCATACTGATTGGGTTAG
AAATGTTGCTTGGGCTCCCAACTTG
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