CX286870

Overview
NameCX286870
Unique NameCX286870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286870 vs. ExPASy Swiss-Prot
Match: PREP2_ARATH (Presequence protease 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP2 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 72/116 (62.07%), Postives = 86/116 (74.14%), Query Frame = 3 
Query:   24 KTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXXXXXXXXXILSTSLKDFKEFADVLEAIKDRGXXXXXXXXXXXXXXNKERANLFEVKKA 371
            KTLDIYDGT DFLR L++D+DTLTKAIIGTIGDVD+YQLPDAKGY+SLLRHLL +T          ILSTSLKDFKEFA+ ++++ D+G              N+ER+N FEVKKA
Sbjct:  963 KTLDIYDGTGDFLRGLDVDEDTLTKAIIGTIGDVDSYQLPDAKGYTSLLRHLLNVTDEERQIRREEILSTSLKDFKEFAEAIDSVSDKGVAVAVASQEDIDAANRERSNFFEVKKA 1078
[Close]
BLAST of CX286870 vs. ExPASy Swiss-Prot
Match: PREP1_ARATH (Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.656e-34
Identity = 72/117 (61.54%), Postives = 85/117 (72.65%), Query Frame = 3 
Query:   24 KTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXXXXXXXXXILSTSLKDFKEFADVLEAIKDRGXXXXXXXXXXXXXXNKERANLFEVKKAL 374
            KTLDIYDGT DFLR L++D +TLTKAIIGTIGDVD+YQLPDAKGYSSLLRHLLG+T          IL+TSLKDFK+FA  ++ ++D+G              N ER+N FEVKKAL
Sbjct:  964 KTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAANNERSNFFEVKKAL 1080
The following BLAST results are available for this feature:
BLAST of CX286870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PREP2_ARATH5.074e-3462.07Presequence protease 2, chloroplastic/mitochondria... [more]
PREP1_ARATH8.656e-3461.54Presequence protease 1, chloroplastic/mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionC01002A06Rv Veg1 Citrus clementina cDNA clone C01002A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286870 ID=CX286870; Name=CX286870; organism=Citrus clementina; type=EST; length=679bp
CTCGTGCCGAATTCGGCACGAGGAAAACACTCGACATATATGACGGAACT
GTGGATTTCTTGCGGGAGTTGGAAATGGATGATGATACATTAACTAAAGC
AATTATTGGGACCATTGGAGATGTAGATGCATACCAGCTGCCTGATGCCA
AAGGTTATAGTAGTTTGCTACGCCATTTATTAGGAATCACAGAAGAAGAA
AGACAAAGGAGGCGAGAAGAGATCTTATCTACAAGTTTGAAGGACTTCAA
GGAATTTGCTGATGTATTGGAGGCCATAAAAGATAGAGGAGTTGCAGTTG
CGGTGGCGTCTCCTGATGATGTTGATGCTGCAAACAAAGAGCGTGCCAAT
TTGTTTGAAGTGAAGAAAGCCCTCTAAGACCCTGGAAGGTTTTGGAAGAC
TGGAAAATTGCTCTGATGGCAAGTGATGCTCTTACCCCAATATTTTCCCA
TCGGGTACGAAATGCTTGAAGCATTTCCAAATTTTTCACAGCAATCAGTA
GAAAAATAATGGGAAAGAGGAAACAAGTGTTTACAGCATGAGATATATGC
TCCATTTCAGTGGTGTTAAAAGGAGTTTAATATATTAACCCTTGAAAGTC
TGCTTTTAAACCTTTTTCGGTTTTACATTTTGATAACTGATTGATCTGCA
TAGCATAATGGGTATAGAGTATGAATGAC
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