CX286871

Overview
NameCX286871
Unique NameCX286871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12036 contig Ccv1_Contig12036:523..1041. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX286871 vs. ExPASy Swiss-Prot
Match: Y4645_ARATH (Uncharacterized protein At4g26450 OS=Arabidopsis thaliana GN=At4g26450 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.051e-23
Identity = 68/171 (39.77%), Postives = 102/171 (59.65%), Query Frame = 1 
Query:   13 RRRYPDDYNSMGLGNYLKGRRKGSFRSYGSDWGREYGRTGSWSERNKISPDVEGDDDSYSGHQEEQRLGKDVDNGLQKAGTGGFAPKSEEAGSIEAESDKHNVLDVMGSRVSSSSNGKDLLKETDGEFSRKTVESTNMNVETGELKDVSCKDETEKLDDT---EGSSIKHC 516
            +RRY D Y+S G  N LKGRR   + S       ++GR+GSWSER+K   + E  DDS SGHQEEQ L +D+ + +Q++ +G F  K E AG  E+  DK+N+ D   S+  SSS GKD+++  D E S+ +  S++++  +GE+K  S  +  E  + T   +GS  + C
Sbjct:  142 KRRYIDGYSSAGSRNSLKGRRSHRYDS-------DFGRSGSWSERSKAF-ETETGDDSVSGHQEEQPLAEDIASSVQRSASGEFMRKCEGAGDSESVLDKYNLQDEAQSKTGSSSAGKDIVQ--DCEISKVSEGSSSLSAGSGEMKGRSGGNGGEDENQTAIEDGSIHQRC 302
The following BLAST results are available for this feature:
BLAST of CX286871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4645_ARATH1.051e-2339.77Uncharacterized protein At4g26450 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01002A07Rv Veg1 Citrus clementina cDNA clone C01002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286871 ID=CX286871; Name=CX286871; organism=Citrus clementina; type=EST; length=519bp
GTGGAGTCTGGTAGGAGAAGATACCCAGATGATTATAACTCAATGGGGTT
GGGGAATTATTTGAAAGGTAGGAGAAAAGGGTCCTTCAGAAGTTACGGAT
CAGATTGGGGAAGAGAATATGGCAGGACTGGTTCATGGTCAGAGAGAAAT
AAAATTTCCCCCGATGTGGAGGGTGATGATGACTCTTATTCTGGGCATCA
AGAGGAGCAACGTCTTGGTAAAGATGTTGATAATGGGTTGCAGAAGGCTG
GGACGGGTGGATTTGCACCAAAAAGTGAGGAAGCTGGTAGCATAGAGGCT
GAATCGGATAAGCATAATGTCCTTGATGTAATGGGCTCACGAGTGAGTTC
TTCAAGCAACGGGAAAGATTTACTTAAAGAGACTGATGGTGAATTCTCCA
GGAAAACTGTGGAATCAACAAACATGAATGTGGAGACTGGAGAGCTGAAG
GATGTTTCTTGCAAAGATGAAACAGAGAAACTGGATGACACGGAGGGCTC
ATCCATCAAGCACTGTGCT
back to top