CX286875

Overview
NameCX286875
Unique NameCX286875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO_TOBAC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.557e-52
Identity = 99/104 (95.19%), Postives = 103/104 (99.04%), Query Frame = 3
Query:    3 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            GEFLVPSYRGSSFLDPKGRGGSTGYDNA+ALPAGGRGDEE+L KEN+KNTSSSTGKITLSVT+SKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE
Sbjct:  229 GEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTSSSTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO_SOLLC (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum lycopersicum GN=PSBO PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.721e-51
Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 3
Query:    3 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            GEFLVPSYRGSSFLDPKGRGGSTGYDNA+ALPAGGRGDEE+L KEN+KNT+S TGKITLSVT+SKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE
Sbjct:  226 GEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTASLTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO_FRIAG (Oxygen-evolving enhancer protein 1, chloroplastic OS=Fritillaria agrestis GN=PSBO PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 9.445e-50
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 3
Query:    3 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            G +LVPSYRGSSFLDPKGRGGS GYDNA+ALPAGGRGDEE+L KENIK+ SSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLG+K PKDVKIQGIWYAQLE
Sbjct:  226 GSYLVPSYRGSSFLDPKGRGGSAGYDNAVALPAGGRGDEEELVKENIKDVSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO1_ARATH (Oxygen-evolving enhancer protein 1-1, chloroplastic OS=Arabidopsis thaliana GN=PSBO1 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.234e-49
Identity = 91/104 (87.50%), Postives = 100/104 (96.15%), Query Frame = 3
Query:    3 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            G+FLVPSYRGSSFLDPKGRGGSTGYDNA+ALPAGGRGDEE+L KEN+KNT++S G+ITL VTKSKPETGEVIGVFES+QPSDTDLGAKVPKDVKIQG+WY QLE
Sbjct:  229 GKFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELVKENVKNTAASVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO2_ARATH (Oxygen-evolving enhancer protein 1-2, chloroplastic OS=Arabidopsis thaliana GN=PSBO2 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 2.104e-49
Identity = 89/104 (85.58%), Postives = 101/104 (97.12%), Query Frame = 3
Query:    3 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            G+FLVPSYRGSSFLDPKGRGGSTGYDNA+ALPAGGRGDEE+L+KEN+KNT++S G+ITL +TKSKPETGEVIGVFES+QPSDTDLGAKVPKDVKIQG+WY Q+E
Sbjct:  228 GKFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELSKENVKNTAASVGEITLKITKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO_SOLTU (Oxygen-evolving enhancer protein 1, chloroplastic OS=Solanum tuberosum GN=PSBO PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.044e-48
Identity = 91/103 (88.35%), Postives = 98/103 (95.15%), Query Frame = 3
Query:    6 EFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            +FLVPSYRGSSFLDPKGRGGSTGYDNA+ALPAGGRGDEE+L KEN+KNT+S TGKIT +VTKS P+TGEVIGVFESIQPSDTDLGAK PKDVKIQGIWYAQLE
Sbjct:  230 DFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENVKNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLE 332          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO_SPIOL (Oxygen-evolving enhancer protein 1, chloroplastic OS=Spinacia oleracea GN=PSBO PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.364e-48
Identity = 91/105 (86.67%), Postives = 99/105 (94.29%), Query Frame = 3
Query:    3 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLEQ 317
            G+FLVPSYRGSSFLDPKGRGGSTGYDNA+ALPAGGRGDEE+L KEN KN +SS G ITLSVT SKPETGEVIGVF+S+QPSDTDLGAKVPKDVKI+G+WYAQLEQ
Sbjct:  227 GDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENNKNVASSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLEQ 331          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO_PEA (Oxygen-evolving enhancer protein 1, chloroplastic OS=Pisum sativum GN=PSBO PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.968e-48
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 3
Query:    3 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            GEFLVPSYRGSSFLDPKGRG STGYDNA+ALPAGGRGDEE+L KEN K+ +SS GKITLSVT++KPETGEVIGVFESIQPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct:  225 GEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 328          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO_WHEAT (Oxygen-evolving enhancer protein 1, chloroplastic OS=Triticum aestivum GN=PSBO PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.851e-46
Identity = 91/102 (89.22%), Postives = 95/102 (93.14%), Query Frame = 3
Query:    9 FLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            FLVPSYRGSSFLDPKGRGGSTGYDNA ALP GGRGDEE+LAKEN+KN SSSTG ITLSVTKSKPETGEVIGVFES+QPSDTDL A  PKDVKIQG+WYAQLE
Sbjct:  224 FLVPSYRGSSFLDPKGRGGSTGYDNAGALPRGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLEA--PKDVKIQGVWYAQLE 323          
BLAST of CX286875 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.116e-37
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 3
Query:    3 GEFLVPSYRGSSFLDPKGRGGSTGYDNAIALPAGGRGDEEDLAKENIKNTSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 314
            G+FLVPSYRGSSFLDPKGRGGSTGYDNA+ALPA  R D E+L KEN+K T +  G    SV K  P TGE+ GVFESIQPSDTDLGAK PKD+K+ G+WYAQL+
Sbjct:  190 GDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPA--RADAEELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291          
The following BLAST results are available for this feature:
BLAST of CX286875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_TOBAC1.557e-5295.19Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SOLLC1.721e-5193.27Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_FRIAG9.445e-5090.38Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO1_ARATH1.234e-4987.50Oxygen-evolving enhancer protein 1-1, chloroplasti... [more]
PSBO2_ARATH2.104e-4985.58Oxygen-evolving enhancer protein 1-2, chloroplasti... [more]
PSBO_SOLTU1.044e-4888.35Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_SPIOL1.364e-4886.67Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_PEA3.968e-4887.50Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_WHEAT4.851e-4689.22Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_CHLRE4.116e-3771.15Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01002A11Rv Veg1 Citrus clementina cDNA clone C01002A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286875 ID=CX286875; Name=CX286875; organism=Citrus clementina; type=EST; length=445bp
GAGGAGAATTCCTGGTACCATCTTACCGTGGATCATCCTTCTTGGACCCA
AAGGGAAGGGGTGGTTCAACTGGTTATGACAATGCTATTGCATTGCCTGC
CGGTGGAAGAGGGGACGAGGAAGATCTCGCCAAGGAGAATATCAAGAATA
CTTCATCTTCAACAGGGAAGATCACCCTCAGCGTTACCAAGAGCAAGCCT
GAGACCGGAGAGGTTATTGGAGTGTTTGAGAGCATTCAGCCATCTGATAC
TGATTTGGGAGCCAAGGTTCCAAAGGATGTTAAGATCCAGGGTATCTGGT
ATGCACAGCTTGAGCAATAGAGCTTTTCTTGTATGAGTGTACTTATTCCT
ATTCAGATTTTGAAACATGTTGAAGGTGTTGCTAAACATTTCTGTAATTC
AATTTAGTAGCACTGAGAATGTAAAAAAAAAAGGGGGGGCCCGGT
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