CX286876

Overview
NameCX286876
Unique NameCX286876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15243 contig Ccv1_Contig15243:82..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286876 vs. ExPASy Swiss-Prot
Match: OSB4_ARATH (Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.320e-22
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1
Query:  316 WPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS---------LWIPILFEGDLAHIASSHLKKDDHVHI 549
            WP+P E+P+Q K+ANS++LIG+V  PVQF ++ DGK WAGTVI    +S S          WIP+LFEGDLAH A+S+LKK+D VHI
Sbjct:   59 WPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSNFWIPVLFEGDLAHTANSYLKKNDRVHI 145          
BLAST of CX286876 vs. ExPASy Swiss-Prot
Match: OSB2_ARATH (Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.251e-21
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:  319 PKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFEGDLAHIASSHLKKDDHVHI 549
            P+P+EI ++ +VAN VNLIG VD PVQF+ SSDGK WAGTVI Q +AS S   WIPI+FEGDLA  A+ ++ KDD +H+
Sbjct:   86 PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSASDSSGFWIPIIFEGDLAKTAARYVSKDDQIHV 164          
BLAST of CX286876 vs. ExPASy Swiss-Prot
Match: OSB3_ARATH (Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OSB3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.739e-18
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  325 PSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFEGDLAHIASSHLKKDDHVHI 549
            P +I ++ +++N +NLIG V+ PVQF   SDGK WAGTVI Q + S S   WIPI+FEGDLA IA  H+KK+D +H+
Sbjct:   71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGDLAKIAVQHVKKEDRIHV 147          
The following BLAST results are available for this feature:
BLAST of CX286876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OSB4_ARATH1.320e-2256.32Protein OSB4, chloroplastic OS=Arabidopsis thalian... [more]
OSB2_ARATH3.251e-2160.76Protein OSB2, chloroplastic OS=Arabidopsis thalian... [more]
OSB3_ARATH5.739e-1854.55Protein OSB3, chloroplastic/mitochondrial OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC01002B01Rv Veg1 Citrus clementina cDNA clone C01002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286876 ID=CX286876; Name=CX286876; organism=Citrus clementina; type=EST; length=551bp
CGAGGTTTCCTAACACTTAAAACCCTAAAAATCAAACAAAACCCCACCGC
CAATCTCCGCACCCTCTTTTCAGAAAGTGCTTTCTGTTTCCTTTTAATTG
GTTCTCTTTAATTTCACTCTTCTTGCCAATAATTTAACGAAGAAAGAAAT
ATGATGTATTCGCTTCATCGAGTAATGGCACAAATCGGGCGATCGCAGAC
CACAGTGAAACGCATCATTTTGTATTCGCCCGCTCGTTTTACTCGGCCTT
TCTCCAGTAGAGCTCATCAGTTCACTAAAGCCACGACGAAAACGACGACG
TCGAAGGATGTGGTTTGGCCGAAGCCGAGCGAAATTCCATTTCAGGTGAA
AGTCGCCAACTCGGTGAATTTGATTGGACATGTGGATGCACCGGTTCAGT
TCCAGACTTCTTCTGACGGCAAACACTGGGCTGGCACTGTCATCGTTCAG
CACGCCGCTTCGCATTCACTCTGGATTCCTATATTGTTCGAAGGTGATTT
GGCTCACATCGCTTCTAGCCATTTGAAAAAAGATGATCATGTACATATAG
C
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