CX286879

Overview
NameCX286879
Unique NameCX286879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:82..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 1.647e-85
Identity = 159/169 (94.08%), Postives = 165/169 (97.63%), Query Frame = 2
Query:   14 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            MA++GNKNINAKLVLLGDVGAGKSSLVLRFVK QF+EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIV+DITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKV+AEEA+ YAQEN LFFMETSAKTATNV DIFYEIAK
Sbjct:    1 MASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAK 169          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 3.327e-78
Identity = 146/169 (86.39%), Postives = 157/169 (92.90%), Query Frame = 2
Query:   14 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            MA++ + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS TLAVN+ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+  SF RAKKWVQELQ QGNPNMVMALAGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTA NVN IFYEIAK
Sbjct:    1 MASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAK 169          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 7.411e-78
Identity = 145/169 (85.80%), Postives = 157/169 (92.90%), Query Frame = 2
Query:   14 MATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            MA+  + N+NAKLVLLGD+GAGKSSLV+RFVKGQF+EFQESTIGAAFFS T++VN+ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDIT+  S  RAKKWVQELQ QGNPNMVMALAGNKADL D RKVTAEEA+ YA+ENGLFFMETSAKTATNVNDIFYEIAK
Sbjct:    1 MASRRHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAK 169          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.948e-63
Identity = 120/166 (72.29%), Postives = 138/166 (83.13%), Query Frame = 2
Query:   23 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 179          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.948e-63
Identity = 120/166 (72.29%), Postives = 138/166 (83.13%), Query Frame = 2
Query:   23 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 179          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.948e-63
Identity = 120/166 (72.29%), Postives = 138/166 (83.13%), Query Frame = 2
Query:   23 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 179          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 3.948e-63
Identity = 120/166 (72.29%), Postives = 138/166 (83.13%), Query Frame = 2
Query:   23 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 179          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.948e-63
Identity = 120/166 (72.29%), Postives = 138/166 (83.13%), Query Frame = 2
Query:   23 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 179          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 3.948e-63
Identity = 120/166 (72.29%), Postives = 138/166 (83.13%), Query Frame = 2
Query:   23 TGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            TGNK    KLVLLG+   GKSSLVLRFVKGQF EFQESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN+ SF RAK WV+ELQ Q +PN+V+AL+GNKADL + R V  +EAQ+YA +N L FMETSAKT+ NVN+IF  IAK
Sbjct:   14 TGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 179          
BLAST of CX286879 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.500e-62
Identity = 120/165 (72.73%), Postives = 136/165 (82.42%), Query Frame = 2
Query:   26 GNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKTATNVNDIFYEIAK 520
            GNK    KLVLLG+   GKSSLVLRFVKGQF E+QESTIGAAF +QT+ ++D TVKFEIWDTAGQERYHSLAPMYYRGA AAI+VYDITN  +F RAK WV+ELQ Q +PN+V+ALAGNKADL   R V  +EAQAYA++N L FMETSAKTA NVN+IF  IAK
Sbjct:   16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAK 180          
The following BLAST results are available for this feature:
BLAST of CX286879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHA1_ARATH1.647e-8594.08Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RHN1_NICPL3.327e-7886.39Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB5_TOBAC7.411e-7885.80Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB5A_PIG3.948e-6372.29Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE3.948e-6372.29Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA3.948e-6372.29Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN3.948e-6372.29Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA3.948e-6372.29Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN3.948e-6372.29Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB5C_BOVIN1.500e-6272.73Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]

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Properties
Property NameValue
Genbank descriptionC01002B04Rv Veg1 Citrus clementina cDNA clone C01002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286879 ID=CX286879; Name=CX286879; organism=Citrus clementina; type=EST; length=521bp
ATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAATGCTAAAT
TGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTGTACTGCGC
TTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATTGGAGCTGC
CTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAAATTTGAGA
TTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTCCAATGTAC
TATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACAAATCAAGC
CTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGCACAAGGCA
ATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACTTGTTGGAT
GCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAGGAAAATGG
CCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGTGAATGACA
TTTTCTATGAAATAGCAAAGA
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