CX286880

Overview
NameCX286880
Unique NameCX286880
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig17 contig Ccv1_Contig17:350..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: CRD1_EUPES (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 3.104e-94
Identity = 168/169 (99.41%), Postives = 169/169 (100.00%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDFDEMETLFNTEINKKLNQ+EFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   60 TLLTPRFYTTDFDEMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 228          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: CRD1_ARATH (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=2 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 9.347e-91
Identity = 162/169 (95.86%), Postives = 166/169 (98.22%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            +LLTPRFYTTDF+EME LFNTEINK LN+AEFEALLQEFKTDYNQTHFVRNKEFKEAADK+QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN ALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   64 SLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFVRNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 232          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: CRD1_GOSHI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 4.639e-90
Identity = 161/169 (95.27%), Postives = 164/169 (97.04%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDFDEME LFNTEINK LNQ+EFE+LLQEFKTDYNQTHFVRNKEFKEAADK+ GPLRQIFVEF ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN ALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   60 TLLTPRFYTTDFDEMEALFNTEINKNLNQSEFESLLQEFKTDYNQTHFVRNKEFKEAADKIDGPLRQIFVEFSERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 228          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: CRD1_HORVU (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 3.927e-89
Identity = 159/169 (94.08%), Postives = 164/169 (97.04%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            +LLTPRFYTTDFDEME LFN EINK+LNQ EF+ALLQEFKTDYNQTHF+RN EFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN ALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITI+R
Sbjct:   72 SLLTPRFYTTDFDEMEQLFNAEINKQLNQDEFDALLQEFKTDYNQTHFIRNPEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIFR 240          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: CTH1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 2.551e-80
Identity = 142/169 (84.02%), Postives = 155/169 (91.72%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDFDEME LF+ E+NK ++  EFEA+L EFK DYNQ HFVRN+ FKEAA+K+QGP R+IF+EFLERSCTAEFSGFLLYKELGRRLK TNPVVAEIF+LMSRDEARHAGFLNK +SDFN ALDLGFLTK RKYTFFKPKFIFYATYLSEKIGYWRYI+IYR
Sbjct:   62 TLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAEKIQGPTRKIFIEFLERSCTAEFSGFLLYKELGRRLKATNPVVAEIFTLMSRDEARHAGFLNKAMSDFNLALDLGFLTKNRKYTFFKPKFIFYATYLSEKIGYWRYISIYR 230          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: CRD1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=CRD1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.692e-71
Identity = 129/169 (76.33%), Postives = 143/169 (84.62%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDFDEME LF+ EIN  L+  E  A L EF+ DYN+ HFVRN+ FK AADK+ G  R+IF+EFLERSCTAEFSGFLLYKEL RR+K ++P VAE+F LMSRDEARHAGFLNK LSDFN ALDLGFLTK R YT+FKPKFI YAT+LSEKIGYWRYITIYR
Sbjct:   62 TLLTPRFYTTDFDEMEQLFSKEINPNLDMEELNACLNEFRNDYNKVHFVRNETFKAAADKVTGETRRIFIEFLERSCTAEFSGFLLYKELARRMKASSPEVAEMFLLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRTYTYFKPKFIIYATFLSEKIGYWRYITIYR 230          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_TRIEI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Trichodesmium erythraeum (strain IMS101) GN=acsF PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 6.518e-68
Identity = 122/169 (72.19%), Postives = 145/169 (85.80%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            T+LTPRFYTTDFDEM      +++  +N+ E  A+L+EF+ DYN+ HFVRN+EF ++ D + G  R++FVEFLERSCTAEFSGFLLYKELGRRLK  +P++AE F+LMSRDEARHAGFLNK +SDFN +LDLGFLTK+RKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   24 TILTPRFYTTDFDEM-----AKMDISVNEDELMAILEEFRADYNRHHFVRNEEFAQSWDHIDGETRRLFVEFLERSCTAEFSGFLLYKELGRRLKNKSPILAECFTLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFKPKFIFYATYLSEKIGYWRYITIYR 187          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF1_SYNY3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1 OS=Synechocystis sp. (strain PCC 6803) GN=acsF1 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 8.513e-68
Identity = 123/169 (72.78%), Postives = 143/169 (84.62%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            T+LTPRFYTTDFDEM      +++   N+ E  A+L+EF+ DYN+ HFVRN+ F ++ D + G  RQ+FVEFLERSCTAEFSGFLLYKELGRRLK  NP++AE F+LMSRDEARHAGFLNK +SDFN +LDLGFLTK+RKYTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   24 TILTPRFYTTDFDEM-----AKMDISPNEDELRAILEEFRVDYNRHHFVRNESFNKSWDHIDGEKRQLFVEFLERSCTAEFSGFLLYKELGRRLKNKNPLLAECFNLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFKPKFIFYATYLSEKIGYWRYITIYR 187          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF3_ANASP (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 3 OS=Anabaena sp. (strain PCC 7120) GN=acsF3 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 3.235e-67
Identity = 123/169 (72.78%), Postives = 144/169 (85.21%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDFDEM       ++  +N+ E  A+L+EF+TDYN+ HFVR+ EF+++ D + G  R++FVEFLERSCTAEFSGFLLYKELGRRLK  +PV+AE F+LMSRDEARHAGFLNK +SDFN +LDLGFLTK+R YTFFKPKFIFYATYLSEKIGYWRYITIYR
Sbjct:   24 TLLTPRFYTTDFDEM-----ARMDISVNEDELLAILEEFRTDYNRHHFVRDAEFEKSWDHIDGDTRRLFVEFLERSCTAEFSGFLLYKELGRRLKDKSPVLAECFNLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRNYTFFKPKFIFYATYLSEKIGYWRYITIYR 187          
BLAST of CX286880 vs. ExPASy Swiss-Prot
Match: ACSF_GRATL (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Gracilaria tenuistipitata var. liui GN=acsF PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 1.605e-66
Identity = 122/169 (72.19%), Postives = 144/169 (85.21%), Query Frame = 2
Query:    2 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYR 508
            TLLTPRFYTTDFDEM  L   +I+  ++  EFEALLQEF+ DYN+ HF+R++EF+++ + +    + +FVEFLERSCTAEFSGFLLYKEL R+L K+NPV+AE F LMSRDEARHAGFLNK +SDFN +LDLGFLTK+RKYTFF PKFIFYATYLSEKIGYWRYITIYR
Sbjct:   15 TLLTPRFYTTDFDEMSKL---DISSNID--EFEALLQEFRADYNRQHFIRDQEFEQSWNNLDSGTKALFVEFLERSCTAEFSGFLLYKELSRKLDKSNPVIAECFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFAPKFIFYATYLSEKIGYWRYITIYR 178          
The following BLAST results are available for this feature:
BLAST of CX286880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CRD1_EUPES3.104e-9499.41Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_ARATH9.347e-9195.86Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_GOSHI4.639e-9095.27Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_HORVU3.927e-8994.08Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CTH1_CHLRE2.551e-8084.02Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
CRD1_CHLRE3.692e-7176.33Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_TRIEI6.518e-6872.19Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF1_SYNY38.513e-6872.78Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF3_ANASP3.235e-6772.78Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_GRATL1.605e-6672.19Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Properties
Property NameValue
Genbank descriptionC01002B05Rv Veg1 Citrus clementina cDNA clone C01002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286880 ID=CX286880; Name=CX286880; organism=Citrus clementina; type=EST; length=508bp
GACCCTTCTGACACCAAGGTTTTATACAACAGATTTTGATGAAATGGAGA
CCCTTTTCAACACTGAGATCAACAAGAAGCTCAACCAGGCTGAATTTGAG
GCATTGCTTCAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTGAG
GAACAAGGAGTTCAAGGAAGCTGCTGACAAGATGCAAGGCCCTCTCAGGC
AGATCTTTGTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGT
TTCCTTCTTTACAAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCAGT
GGTAGCTGAGATTTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGCCG
GGTTTCTGAACAAGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGC
TTCCTGACAAAAGCTAGGAAATACACATTTTTCAAGCCAAAGTTTATCTT
TTATGCCACATATTTATCTGAGAAGATTGGATACTGGAGATACATTACCA
TATACAGA
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