CX286881

Overview
NameCX286881
Unique NameCX286881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length470
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9553 contig Ccv1_Contig9553:33..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.292e-33
Identity = 81/168 (48.21%), Postives = 106/168 (63.10%), Query Frame = 2
Query:   20 EESSILEFIRQFL----------LGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEP-------LDITCLGSSNWTESPQKRSEPKLADT---EERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            EESS L+ I++ L          + DF   D   +S L  +E   PV K EP SP    ++ P+        ++     SS+ T SP+  +      T   EE +HYRGVRRRPWGK+AAEIRDPA+KGSR+WLGTF+SD+DAA+AYD AAF++RGRKA+LNFPL+AG
Sbjct:    5 EESSDLDVIQKHLFEDLMIPDGFIEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSP----VLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAG 168          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.249e-32
Identity = 83/171 (48.54%), Postives = 106/171 (61.99%), Query Frame = 2
Query:   20 EESSILEFIRQFLLGDFTSLD------DPNLSFLQPMESEFP-VIKSEPDSPTFCEIIKPEPLDITCL---GSSNWTESPQKRSEPKLADTEER-------------KHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            EESS LE I+  LL D    D      D + SF+  +    P V K EPDSP    ++ P+      L   G S+ + SP+  S     +T++              +HYRGVRRRPWGK+AAEIRDPA+KGSR+WLGTF+SDVDAA+AYD AAF++RGRKA+LNFPL+AG
Sbjct:    5 EESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSP----VLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAG 171          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.688e-29
Identity = 70/159 (44.03%), Postives = 96/159 (60.38%), Query Frame = 2
Query:   35 LEFIRQFLLGDFTSLDDP-NLSFLQ-PMESEFPVIKSEPD-----------SPTFCEIIKPEPLDITCLGSSNWTESPQKRSEPKLA---DTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            ++F       +   LD P ++ FL  P E +  V  S+ D            P     I+  PL I+    + W +   + ++P++      EE+KHYRGVR+RPWGK+AAEIRDP ++GSRVWLGTFD+ ++AA+AYD AAFR+RG KAILNFPLE G
Sbjct:   59 IDFSESVCKPEIIDLDTPRSMEFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVG 217          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.519e-27
Identity = 69/153 (45.10%), Postives = 96/153 (62.75%), Query Frame = 2
Query:   17 EEESSILEFIRQFLLGDFTSL--DDPNL--SFLQPMESEFP--VIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            ++E+  ++FI Q LL DF S+  D P+L  + L    SE     I ++   P      +  PL    +  +  T++ ++         EE +HYRGVRRRPWGKYAAEIRDP +KG R+WLGT+D+ V+A +AYD AAF++RGRKAILNFPL+
Sbjct:    4 KQEALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTLNQRKPPLPNLSVSRTVSTKTEKE---------EEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLD 147          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.281e-26
Identity = 69/149 (46.31%), Postives = 85/149 (57.05%), Query Frame = 2
Query:   17 EEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            E++ S L+ I Q LL DF SLD    +      S     K     P    I  P             T +P       +    +++HYRGVRRRPWGKYAAEIRDP +KG RVWLGTFD+ ++AA+ YD AAF++RG KAILNFPLEAG
Sbjct:   10 EQDQSALDLITQHLLTDFPSLDTFASTIHHCTTSTLSQRK-----PPLATIAVP-------------TTAP-------VVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAG 133          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.979e-26
Identity = 68/164 (41.46%), Postives = 88/164 (53.66%), Query Frame = 2
Query:   59 LGDFTSLDDPNLSFLQ--------------------PMESEFP-------VIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKRSEPKL----ADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            + DFTS D     F +                     ++SE P         +S P   T     KP PL I     + W +      +P+L       EE++HYRGVR RPWGK+AAEIRDP R+G+RVWLGTF++ ++AA+AYD  AFR+RG KAILNFPLE
Sbjct:   34 MNDFTSFDQTGFEFSEFETKPEIIDLVTPKPEIFDFDVKSEIPSESNDSFTFQSNPPRVTVQSNRKP-PLKIAPPNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLE 196          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.522e-25
Identity = 50/64 (78.12%), Postives = 60/64 (93.75%), Query Frame = 2
Query:  266 ERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            E+KHYRGVR+RPWGK+AAEIRDP RKG+RVWLGTFD+ ++AAKAYD AAF++RG KAI+NFPLE
Sbjct:  141 EKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.302e-25
Identity = 52/70 (74.29%), Postives = 64/70 (91.43%), Query Frame = 2
Query:  248 KLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 457
            +LA TE +KHYRGVR+RPWGK+AAEIRDP RKG+RVWLGTFD+ ++AAKAYD AA+++RG KAI+NFPLE
Sbjct:  129 ELAPTE-KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE 197          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.212e-24
Identity = 57/118 (48.31%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  119 EFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWT--ESPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA 466
            +FP +K EP                    + N+T  E   K++ P      + KHYRGVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFPL   +
Sbjct:   82 DFPAVKVEP--------------------TENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNS 179          
BLAST of CX286881 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.083e-23
Identity = 49/80 (61.25%), Postives = 61/80 (76.25%), Query Frame = 2
Query:  224 SPQKRSEPKLADTEERKHYRGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 463
            SP + +    A+    +HYRGVRRRPWGK+AAEIRDPA+ G+RVWLGT+++D +AA AYD AA+RMRG KA LNFP   G
Sbjct:   87 SPAETTAAPAAELPRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIG 166          
The following BLAST results are available for this feature:
BLAST of CX286881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
EF107_ARATH4.292e-3348.21Ethylene-responsive transcription factor ERF107 OS... [more]
EF106_ARATH1.249e-3248.54Ethylene-responsive transcription factor ERF106 OS... [more]
EF102_ARATH1.688e-2944.03Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF104_ARATH3.519e-2745.10Ethylene-responsive transcription factor ERF104 OS... [more]
EF105_ARATH2.281e-2646.31Ethylene-responsive transcription factor ERF105 OS... [more]
EF103_ARATH2.979e-2641.46Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF5_TOBAC2.522e-2578.13Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY4.302e-2574.29Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF101_ARATH6.212e-2448.31Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF1_TOBAC3.083e-2361.25Ethylene-responsive transcription factor 1 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC01002B06Rv Veg1 Citrus clementina cDNA clone C01002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286881 ID=CX286881; Name=CX286881; organism=Citrus clementina; type=EST; length=470bp
CAACATGACAACGTTGGAAGAAGAATCATCCATCCTGGAATTCATTCGCC
AGTTTCTTCTCGGAGACTTTACCTCCTTAGACGACCCAAATCTCTCTTTT
CTCCAGCCTATGGAGTCAGAATTCCCTGTGATCAAATCCGAACCCGACTC
CCCCACCTTTTGTGAAATAATAAAACCTGAACCATTGGACATAACGTGTT
TGGGTTCCAGTAATTGGACAGAATCACCTCAAAAGCGTTCGGAGCCGAAG
CTGGCGGACACTGAAGAGAGGAAGCATTACAGGGGAGTAAGAAGAAGGCC
GTGGGGCAAGTATGCGGCTGAAATCCGGGACCCGGCAAGAAAGGGCAGCA
GGGTTTGGTTGGGAACTTTTGATAGTGATGTTGATGCTGCTAAAGCTTAT
GATTCTGCTGCCTTCCGGATGAGGGGTCGCAAAGCAATCTTGAATTTCCC
TCTGGAGGCTGGAGCTGATA
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