CX286895

Overview
NameCX286895
Unique NameCX286895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8343 contig Ccv1_Contig8343:19..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: TDT_ARATH (Tonoplast dicarboxylate transporter OS=Arabidopsis thaliana GN=TDT PE=2 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 6.457e-71
Identity = 135/189 (71.43%), Postives = 152/189 (80.42%), Query Frame = 3
Query:   27 MNGDHEAHPNSGDIKAPLLP---SHRQIQRSPSSHFTLKTIFTPNNFYILLGPLLCAVICVCVKLDGQ--ATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            MNG       S D+K+PLLP   +    +R       L+TIFTP N YI LGPLLCAV+C+CV L G    T+RNMLGVL W+FAWWLTEAVPMPITSM PLFLFPLFGIS+AD VA+SYMDDVI+LVLGSFILALAVEHYNIH+RLALNIT++FC EP+N PLLLLGIC TTAFVSMWMHNVAAAV+M
Sbjct:    1 MNGGDVTVAGSDDLKSPLLPVVHNDEPFERQTVGQ-QLRTIFTPKNCYIALGPLLCAVVCLCVDLGGDETTTARNMLGVLVWMFAWWLTEAVPMPITSMTPLFLFPLFGISAADDVANSYMDDVISLVLGSFILALAVEHYNIHRRLALNITLVFCVEPLNAPLLLLGICATTAFVSMWMHNVAAAVMM 188          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: S13A2_RABIT (Solute carrier family 13 member 2 OS=Oryctolagus cuniculus GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  267 WWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +W T+A+P+ +T++ PL LFP+ GI  A  V   Y+ D   L +G  +LA+AVEH+N+HKR+AL + +L     + P LL+LG    TAF+SMW+ N A+  +M
Sbjct:   48 FWCTDALPLAVTALLPLCLFPMMGIMEASEVGLEYLKDTNVLFIGGLLLAIAVEHWNLHKRIALRVLLL---TGVRPALLILGFMVVTAFLSMWISNTASTAMM 148          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.971e-19
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 3
Query:  270 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            W TEA+P+ +T++ P+ LFPL GI  A  V   Y  D   L +G  ++A+AVEH+N+HKR+AL + ++     + P LLLLG    TAF+SMW+ N A   +M
Sbjct:   49 WCTEALPLAVTALFPIILFPLMGIMEASKVCLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALGVLLII---GVRPALLLLGFMLVTAFLSMWISNTATTAMM 148          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: SDCS_STAS1 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sdcS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 51/140 (36.43%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  162 ILLGPLLCAVICVCVKLDGQATSRN-MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            ++LGPLL  +  +  + D  +     +L +  W+  WW+TEA+P+  TS+ PL L P+  + + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I         +   +LLG    T F+SM++ N AA +IM
Sbjct:   35 LILGPLLFVLTLLLFQPDNLSDKGVFVLAITLWIATWWITEAIPIAATSLLPLILLPVGHVLNPEEVSAQYGNDIIFLFLGGFILAIAMERWNLHTRVALRIINTL---GTSTGRILLGFMIATGFLSMFVSNTAAVMIM 171          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: SDCS_STAAW (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MW2) GN=sdcS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  237 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIM 172          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: SDCS_STAAS (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MSSA476) GN=sdcS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  237 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIM 172          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: SDCS_STAAR (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain MRSA252) GN=sdcS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  237 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIM 172          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: SDCS_STAAN (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain N315) GN=sdcS PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  237 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIM 172          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  237 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIM 172          
BLAST of CX286895 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  237 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIM 578
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIM 172          
The following BLAST results are available for this feature:
BLAST of CX286895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
TDT_ARATH6.457e-7171.43Tonoplast dicarboxylate transporter OS=Arabidopsis... [more]
S13A2_RABIT3.972e-2043.27Solute carrier family 13 member 2 OS=Oryctolagus c... [more]
S13A2_MOUSE1.971e-1943.69Solute carrier family 13 member 2 OS=Mus musculus ... [more]
SDCS_STAS14.392e-1936.43Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAW4.392e-1941.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAS4.392e-1941.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAR4.392e-1941.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAN4.392e-1941.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAM4.392e-1941.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC4.392e-1941.23Sodium-dependent dicarboxylate transporter sdcS OS... [more]

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Properties
Property NameValue
Genbank descriptionC01002C09Rv Veg1 Citrus clementina cDNA clone C01002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286895 ID=CX286895; Name=CX286895; organism=Citrus clementina; type=EST; length=579bp
GTATCGTGTTACACGTTCACTGCAAAATGAACGGTGACCACGAAGCTCAT
CCAAATTCTGGTGACATCAAGGCGCCACTCCTACCTTCCCATCGTCAAAT
CCAACGGTCACCAAGCTCCCACTTCACATTGAAAACCATTTTCACACCAA
ACAATTTCTACATCCTCCTAGGACCTCTCCTGTGCGCTGTTATATGTGTA
TGTGTGAAGCTCGATGGGCAGGCGACAAGCAGGAACATGTTGGGTGTTCT
TGCTTGGGTCTTCGCTTGGTGGCTCACGGAGGCCGTACCCATGCCCATTA
CCTCTATGGCGCCTCTGTTTCTGTTTCCTCTGTTTGGGATCTCTTCTGCT
GACACCGTTGCTCATTCTTACATGGATGATGTTATTGCCCTCGTTCTTGG
TAGCTTTATTCTTGCTCTTGCCGTTGAGCACTACAACATTCACAAAAGAT
TGGCCTTAAATATAACTATTCTATTCTGTGGAGAGCCAATGAATCCGCCC
TTGCTGCTTCTTGGGATATGTGGCACGACAGCATTCGTGAGCATGTGGAT
GCATAACGTGGCAGCAGCAGTGATCATGA
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