CX286896

Overview
NameCX286896
Unique NameCX286896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6 contig Ccv1_Contig6:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH1_ORYSJ (Cell division protease ftsH homolog 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 8.066e-67
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 405
            ALGGRVAEEVIFG+ENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVE AY+RA QIITTHIDILHKLAQLL+EKETVDGEEFMSLFIDG+AELFVA
Sbjct:  552 ALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVEKAYSRATQIITTHIDILHKLAQLLMEKETVDGEEFMSLFIDGQAELFVA 686          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH1_ARATH (Cell division protease ftsH homolog 1, chloroplastic OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 3.389e-65
Identity = 122/135 (90.37%), Postives = 132/135 (97.78%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 405
            ALGGRVAEEVIFG+ENVTTGASNDFMQVSRVARQM+ERFGFSKKIGQVA+GGPGGNPF+GQQMSSQKDYSMATAD+VDAEVRELVE AY RA +IITTHIDILHKLAQLLIEKETVDGEEFMSLFIDG+AEL+++
Sbjct:  582 ALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMIERFGFSKKIGQVAVGGPGGNPFMGQQMSSQKDYSMATADIVDAEVRELVEKAYKRATEIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGQAELYIS 716          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH5_ARATH (Cell division protease ftsH homolog 5, chloroplastic OS=Arabidopsis thaliana GN=FTSH5 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 3.747e-64
Identity = 124/135 (91.85%), Postives = 130/135 (96.30%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 405
            ALGGRVAEEVIFG+ENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVA+GG GGNPFLGQ MSSQKDYSMATADVVDAEVRELVE AY RAK+IITT IDILHKLAQLLIEKETVDGEEFMSLFIDG+AEL+V+
Sbjct:  570 ALGGRVAEEVIFGDENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQSMSSQKDYSMATADVVDAEVRELVEKAYVRAKEIITTQIDILHKLAQLLIEKETVDGEEFMSLFIDGQAELYVS 704          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_TOBAC (Cell division protease ftsH homolog, chloroplastic OS=Nicotiana tabacum GN=FTSH PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 7.066e-63
Identity = 122/135 (90.37%), Postives = 129/135 (95.56%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 405
            ALG RVAEEVIFG++NVTTGASNDFMQVSRVARQMVER GFSKKIGQVAIGG GGNPFLGQQMS+QKDYSMATADVVDAEVRELVE AY RA +IITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL+++
Sbjct:  573 ALGERVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYERATEIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYIS 707          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_MEDSA (Cell division protease ftsH homolog, chloroplastic OS=Medicago sativa GN=FTSH PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 7.812e-62
Identity = 122/135 (90.37%), Postives = 128/135 (94.81%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 405
            ALGGRVAEEV FG++NVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGG GGNPFLGQQMSSQKDYSMATAD+VD EVRELV+ AY RA QII THIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL+V+
Sbjct:  573 ALGGRVAEEV-FGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGGGGNPFLGQQMSSQKDYSMATADIVDKEVRELVDKAYERATQIINTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVS 706          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_CAPAN (Cell division protease ftsH homolog, chloroplastic (Fragment) OS=Capsicum annuum GN=FTSH PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.076e-53
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEK 339
            ALGGRVAEEVIFGE+NVTTGASNDFMQVSRVARQMVER GFSKKIGQVAIGG GGNPFLGQQMS+QKDYSMATADVVD+EVRELVE AY RAKQIITTHIDILHKLAQLLIEK
Sbjct:  550 ALGGRVAEEVIFGEDNVTTGASNDFMQVSRVARQMVERLGFSKKIGQVAIGGGGGNPFLGQQMSTQKDYSMATADVVDSEVRELVEKAYERAKQIITTHIDILHKLAQLLIEK 662          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH4_SYNY3 (Cell division protease ftsH homolog 4 OS=Synechocystis sp. (strain PCC 6803) GN=slr1604 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.136e-36
Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL 396
            ALGGR+AEE+IFGEE VTTGASND  QV+RVARQMV RFG S ++G VA+G  GG  FLG+ ++S +D+S  TA  +D EV +LV+ AY RAKQ++  +  IL +LA++L+EKETVD EE  +L  +  A+L
Sbjct:  481 ALGGRIAEEIIFGEEEVTTGASNDLQQVARVARQMVTRFGMSDRLGPVALGRQGGGVFLGRDIASDRDFSDETAAAIDEEVSQLVDQAYQRAKQVLVENRGILDQLAEILVEKETVDSEELQTLLANNNAKL 612          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FSTH_PORYE (Cell division protease ftsH homolog OS=Porphyra yezoensis GN=ftsH PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.139e-28
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 372
            ALGGR AEE+IFG+  VTTGASND  QV+ +ARQMV RFG SK IG +++   GG+PFLG+ M    +YS   A  +D +VRE+V   Y +AK II  +  ++ +L  LLIEKET++G EF  +
Sbjct:  489 ALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSK-IGPLSLESQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAKHIIIDNRVVIDRLVDLLIEKETIEGNEFRDI 611          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_PORPU (Cell division protease ftsH homolog OS=Porphyra purpurea GN=ftsH PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.259e-27
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF 363
            ALGGR AEE+IFG+  VTTGASND  QV+ +ARQMV RFG SK IG +++   G +PFLG+ M    +YS   A  +D +VRE+V   Y  AK+I+  +  ++ +L  LLIEKET++G EF
Sbjct:  489 ALGGRAAEEIIFGDAEVTTGASNDLQQVTSMARQMVTRFGMSK-IGPLSLESQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAKKIVKDNRVVMDRLVDLLIEKETIEGNEF 608          
BLAST of CX286896 vs. ExPASy Swiss-Prot
Match: FTSH_GUITH (Cell division protease ftsH homolog OS=Guillardia theta GN=ftsH PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.908e-26
Identity = 61/127 (48.03%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 ALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFID 381
            ALGGR AEEV+FG   VTTGA ND  QV+ +ARQMV RFG S  IG +++     +PFLG+ M S   YS   A  +D +VR +++  +T   QII  +  ++ KL  LLIEKET+DG+EF  +  D
Sbjct:  489 ALGGRAAEEVVFGLPEVTTGAGNDLQQVTSMARQMVTRFGMSN-IGPLSLESQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHCHTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFRQIVGD 614          
The following BLAST results are available for this feature:
BLAST of CX286896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
FTSH1_ORYSJ8.066e-6795.56Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH1_ARATH3.389e-6590.37Cell division protease ftsH homolog 1, chloroplast... [more]
FTSH5_ARATH3.747e-6491.85Cell division protease ftsH homolog 5, chloroplast... [more]
FTSH_TOBAC7.066e-6390.37Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_MEDSA7.812e-6290.37Cell division protease ftsH homolog, chloroplastic... [more]
FTSH_CAPAN5.076e-5393.81Cell division protease ftsH homolog, chloroplastic... [more]
FTSH4_SYNY31.136e-3656.82Cell division protease ftsH homolog 4 OS=Synechocy... [more]
FSTH_PORYE1.139e-2851.61Cell division protease ftsH homolog OS=Porphyra ye... [more]
FTSH_PORPU1.259e-2751.24Cell division protease ftsH homolog OS=Porphyra pu... [more]
FTSH_GUITH6.908e-2648.03Cell division protease ftsH homolog OS=Guillardia ... [more]

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Properties
Property NameValue
Genbank descriptionC01002C10Rv Veg1 Citrus clementina cDNA clone C01002C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286896 ID=CX286896; Name=CX286896; organism=Citrus clementina; type=EST; length=475bp
GCACTTGGTGGAAGGGTTGCAGAAGAAGTCATTTTTGGCGAGGAAAATGT
GACAACAGGAGCATCAAATGACTTCATGCAAGTTTCACGGGTAGCACGGC
AGATGGTTGAAAGATTTGGGTTTAGCAAGAAAATTGGACAAGTTGCCATT
GGAGGACCTGGTGGAAATCCATTCTTGGGTCAACAAATGTCTTCTCAGAA
AGACTACTCCATGGCAACTGCCGATGTGGTGGATGCAGAGGTCAGAGAAT
TGGTTGAAACAGCATATACAAGGGCCAAGCAGATCATCACAACCCACATT
GACATCCTTCACAAGCTTGCTCAACTCCTCATAGAGAAAGAAACCGTTGA
TGGAGAAGAATTTATGAGCCTTTTCATTGATGGAAAAGCTGAGCTATTTG
TTGCCTGATTGTACATGAAAGAATCAGAATTCAGATTCGTGTTGTATATG
CCCATGTAAAATCAAGTAATTAAAT
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