CX286902

Overview
NameCX286902
Unique NameCX286902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6107 contig Ccv1_Contig6107:1106..1748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286902 vs. ExPASy Swiss-Prot
Match: RETOL_ARATH (Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 8.399e-60
Identity = 112/170 (65.88%), Postives = 133/170 (78.24%), Query Frame = 1
Query:    1 VLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSTSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPT 510
            V LDR+L+++ F KRKSDYV   IPK  +  L+K+M+ELGKIGLVFNPYGGKMAE+  +   FPHR   LFKIQYS++W +   EIE+  L+QA  LYSFMT FVS +PRS+Y NYRDVDIG+N HG +SY EG+VYG KYF  NFDRLVK+KT VDP NFFRNEQSIPT
Sbjct:  367 VFLDRNLDTSSFGKRKSDYVATAIPKKGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGENFDRLVKIKTAVDPGNFFRNEQSIPT 535          
BLAST of CX286902 vs. ExPASy Swiss-Prot
Match: RETO_ESCCA (Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 52/161 (32.30%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   40 KRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSTSPRSAYLNYRDVDIGINHHGEDSYAEGKV-----YGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIP 507
            K K D  ++P+P  +   L +++ +     +  N +GG+M++I +  T FPHR+G    ++Y ++W+    + + + L     +Y FM PFVS +PR  Y+N+ D+D+G    G  +     +     +GE YF  N++RL++ KT++DP N F + QSIP
Sbjct:  357 KTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 517          
BLAST of CX286902 vs. ExPASy Swiss-Prot
Match: RETO_PAPSO (Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.548e-21
Identity = 57/165 (34.55%), Postives = 88/165 (53.33%), Query Frame = 1
Query:   40 KRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATS----LYSFMTPFVSTSPRSAYLNYRDVDIG-INHHGEDSYAEG----KVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIP 507
            K K D+ +  +P        + + E     +  N +GGKM+EI    T FPHR G     +Y I+W+      EE ++ + +      Y ++ PFVS  PR  Y+N+ D+DIG I+   + S        + +GE+YF+ N++RLVK KT++DP N F + QSIP
Sbjct:  361 KTKVDFTKVSVPLNVFRHALEMLSEQPGGFIALNGFGGKMSEISTDFTPFPHRKGTKLMFEYIIAWNQD----EESKIGEFSEWLAKFYDYLEPFVSKEPRVGYVNHIDLDIGGIDWRNKSSTTNAVEIARNWGERYFSSNYERLVKAKTLIDPNNVFNHPQSIP 521          
The following BLAST results are available for this feature:
BLAST of CX286902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RETOL_ARATH8.399e-6065.88Reticuline oxidase-like protein OS=Arabidopsis tha... [more]
RETO_ESCCA2.161e-2332.30Reticuline oxidase OS=Eschscholzia californica GN=... [more]
RETO_PAPSO1.548e-2134.55Reticuline oxidase OS=Papaver somniferum GN=BBE1 P... [more]
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Properties
Property NameValue
Genbank descriptionC01002D04Rv Veg1 Citrus clementina cDNA clone C01002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286902 ID=CX286902; Name=CX286902; organism=Citrus clementina; type=EST; length=643bp
GTTTTGCTGGACAGAGACCTTAACTCCGCTGATTTCCTGAAGAGGAAATC
TGATTATGTTCAGAAACCGATTCCAAAATATTCCCTGAATTTGCTGTGGA
AACAAATGATGGAATTGGGGAAAATTGGGTTGGTCTTCAATCCTTATGGA
GGAAAAATGGCTGAAATTCCAGCATCAGAGACTGCATTTCCACACAGAGC
AGGAAACTTGTTCAAGATTCAGTATTCAATAAGTTGGAGTGATCCTGGAA
CTGAGATTGAGGAGGACAGACTATCTCAGGCGACAAGCCTTTACAGTTTT
ATGACTCCATTTGTGTCAACGAGTCCACGAAGTGCTTATTTGAATTATAG
GGATGTGGATATCGGTATCAATCATCATGGTGAAGATAGCTATGCTGAGG
GGAAAGTGTATGGGGAGAAGTATTTTAATGGTAATTTTGATAGGTTGGTG
AAAGTGAAGACCATGGTTGATCCAGAAAATTTCTTCAGGAATGAGCAGAG
CATCCCCACTCAACCAAGTAAGGCATAAAACGATTGATTAAAGCACTTTT
GTGTTGGTGATCTTTTTGCAATAGGCTTTATATACAGCAAATAGGATTAT
AGGAGTAAGCTTTTGTATTGCTATTACGAGCGAATAATTCAAT
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