CX286907

Overview
NameCX286907
Unique NameCX286907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig542 contig Ccv1_Contig542:133..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286907 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.104e-21
Identity = 54/102 (52.94%), Postives = 65/102 (63.73%), Query Frame = -2
Query:  323 GKRKAVLKASRSSNKR---TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 619
            GK KA      +  K+   TK  K A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT              K +YEK + AYN
Sbjct:    4 GKSKAKSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYN 105          
BLAST of CX286907 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.196e-21
Identity = 53/98 (54.08%), Postives = 64/98 (65.31%), Query Frame = -2
Query:  323 KRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 616
            K+ A  KA + + K       A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP  KAVSAVGKA G KWK+++D             K++YEK M AYN
Sbjct:   21 KKGAATKARKPAGKG-----KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN 113          
BLAST of CX286907 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  323 GKRKAVLKASRSSNKRTKNVKSAK----KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 619
            G  KA  K +  S    K  K  K    KDPNKPKR PSAFFVF+EEFRK +K+++P  K+V+AVGKA G++WKSL++             KL+Y K + AYN
Sbjct:    8 GAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYN 110          
BLAST of CX286907 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = -2
Query:  323 AGKRKAVLKASRSSNKRTKNVKSAK--KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 622
            A  + AV K   ++ K  K     K  KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++             K +YE  + AYN
Sbjct:   13 AETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYN 114          
BLAST of CX286907 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.112e-16
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = -2
Query:  323 KAVLKASRSSNKRTKNVKS-AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDXXXXXXXXXXXXXKLDYEKLMTAYN 610
            K  +K+  +     K  K  A KDPNKPKR PSAFFVF+ EFR+ +KQ++P  K+V+AVGKA GE+WKSL++             K +Y K + AYN
Sbjct:   15 KLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN 111          
The following BLAST results are available for this feature:
BLAST of CX286907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HMGL_IPONI1.104e-2152.94HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_SOYBN4.196e-2154.08HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
MNB1B_MAIZE5.671e-1847.57DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_VICFA7.407e-1848.04HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
HMGL_WHEAT3.112e-1646.39HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC01002D09Rv Veg1 Citrus clementina cDNA clone C01002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286907 ID=CX286907; Name=CX286907; organism=Citrus clementina; type=EST; length=623bp
CTCGTGCCGAATTTTTTTTTTTTTTTTATATGCAGACTGCAGATGAATGC
AGTACCAGCATTACATTACAAGTTGGCAGAACGAAGAGTTGAATTCTTTT
ATAGTTAAAAACACAAAATAACCCAACTGCATGGTCATACAACGTCCAGG
ATTTTTTCTGGATAAAGCAAAGGAACTATACCCAGTGGCGCTCCTGAATC
TAGTCGTCGTCCTCCTCTTCATCCTCCTCTTCAAGTTCTTCATCATCATC
GTCGTCATGCACCTCGGATTTTGACTTCTCAGACTCCTCTTCATCTTCAT
CTTCAGTACTTTCCTGTTTCTTGTTGTATGCTGTCATCAGCTTTTCATAA
TCCAATTTCCTTTTTGCTGCTTTTGCTTCAAATGGGGCTTTTTCTGCATC
AGTCAGCGACTTCCATTTCTCTCCCCCAGCTTTCCCCACAGCTGAGACAG
CTTTAACATTGGGATGCTCTTGTTTGTAAACCTTTCTGAACTCTTCTAGG
AAAACAAAAAAAGCACTAGGAGGCCTCTTCGGCTTGTTAGGGTCTTTCTT
TGCTGACTTGACATTCTTGGTGCGCTTGTTGCTACTCCTACTAGCTTTAA
GCACAGCCTTTCGCTTTCCTGCA
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