CX286910

Overview
NameCX286910
Unique NameCX286910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9976 contig Ccv1_Contig9976:306..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.283e-47
Identity = 94/103 (91.26%), Postives = 96/103 (93.20%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVDTFRLQEQPAFDKK FVTYMKRFIKLLTPKL EE+QE FKKNIEGATKFLLSKLSDLQFFVGESMHDDG LVFAYY+ GATDPTFLY A ALKEVKC
Sbjct:   66 KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKFLLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.419e-46
Identity = 89/103 (86.41%), Postives = 96/103 (93.20%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E+QE+FKK+IEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK+GATDPTFLY A  LKE+KC
Sbjct:   66 KVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 8.607e-44
Identity = 83/103 (80.58%), Postives = 91/103 (88.35%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVDTFRLQEQP  DKK F+ Y+K+FIKLLTPKL  E+QE FKKNIEGATKFLL KL D +FFVGESMHDD C+VFAYY+EGATDPTFLY+A ALKEVKC
Sbjct:   66 KVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFRFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 168          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.918e-43
Identity = 85/103 (82.52%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVDTFRLQEQPAFDKK FVT+MKRFIK LTPKL  E+QE+FKK+IEGATK+LLSK+ D QFFVGESM DD CLVFAYYK+GA DPTFLY A ALKEVKC
Sbjct:   66 KVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKYLLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.623e-42
Identity = 82/103 (79.61%), Postives = 92/103 (89.32%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVD FRLQEQPAFDKK F+ ++KR+IKLLTPKL  E+QE+FKK+IEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY A ALKE+KC
Sbjct:   65 KVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLCKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC 167          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.616e-42
Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            +VVDIVDTFRLQEQPAFDKK FVT+MKR+IK LTPKL  E QE FKKNIE ATKFLL K+ DLQFFVGESMHDDG LVFAYYKEG+ DP FLY+A  LKE+KC
Sbjct:   66 RVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLEGETQEAFKKNIEAATKFLLQKIKDLQFFVGESMHDDGALVFAYYKEGSADPPFLYIAPGLKEIKC 168          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.723e-42
Identity = 82/103 (79.61%), Postives = 88/103 (85.44%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVDTFRLQEQPAFDKK FVTY+KR+IK LTPKL  E QE FKKNIE ATKFLLSKL D QFFVGE MHDD  LVFAYYK+G+ DPTFLY+A  LKE+KC
Sbjct:   66 KVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKFLLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.168e-42
Identity = 83/103 (80.58%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVDTFRLQEQP FDKK FVT+MKR+IK L+ KL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GATDPTFLY +  LKEVKC
Sbjct:   66 KVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.052e-41
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVDTFRLQEQP FDKK F+ ++KR+IK L  KLSEERQ  FKKN+EGA K L+SKLSDLQFFVGESMHDDG +VFAYYK+GATDPTFLY AD LKEVKC
Sbjct:   65 KVVDIVDTFRLQEQPPFDKKQFLGFIKRYIKNLATKLSEERQAEFKKNVEGAAKMLVSKLSDLQFFVGESMHDDGSMVFAYYKDGATDPTFLYFADGLKEVKC 167          
BLAST of CX286910 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.052e-41
Identity = 85/103 (82.52%), Postives = 90/103 (87.38%), Query Frame = -2
Query:  198 KVVDIVDTFRLQEQPAFDKKPFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYMADALKEVKC 506
            KVVDIVDTFRLQEQP FDKK FVT++KR+IKLLTPKL  E+QE FKKNIEGATKFLLSKLSDLQFFVGESM DD  LVFA YKEGATDP F+Y A  LKEVKC
Sbjct:   68 KVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          
The following BLAST results are available for this feature:
BLAST of CX286910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
TCTP_HEVBR1.283e-4791.26Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV1.419e-4686.41Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA8.607e-4480.58Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.918e-4382.52Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA1.623e-4279.61Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC3.616e-4279.61Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU4.723e-4279.61Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ6.168e-4280.58Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ1.052e-4179.61Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN1.052e-4182.52Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionC01002D12Rv Veg1 Citrus clementina cDNA clone C01002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286910 ID=CX286910; Name=CX286910; organism=Citrus clementina; type=EST; length=507bp
TTTTTTTTTTTTTTTTTTTCAAACCATAAAACCCAATAATTAAGAGCAGA
AAAACATATTGTTTATGTCAAAATAAAAACTAAAAAACAGCAAGCACAAG
TCCCGAGTAAACCAGCACAAAAGATACATAAAAATAACCGCGGGCAATAA
TTAAAATTAGAACTACAGCAGGCACTTCCTCTTCGAAGCCCAGCTTAGCA
CTTCACCTCCTTCAATGCATCAGCCATATACAAAAATGTTGGGTCGGTCG
CACCTTCCTTGTAGTAAGCAAAGACAAGACAGCCATCATCATGCATGCTC
TCCCCAACAAAGAATTGAAGGTCACTGAGCTTCGAGAGCAAGAACTTGGT
CGCTCCCTCAATATTCTTCTTAAATATCTCCTGCCTCTCCTCACTCAGCT
TGGGCGTCAGCAACTTGATGAATCTCTTCATGTATGTTACAAACGGCTTC
TTGTCAAAAGCGGGTTGCTCCTGTAGCCTGAATGTGTCGACAATGTCAAC
CACCTTC
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