CX286914

Overview
NameCX286914
Unique NameCX286914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286914_ssr29 microsatellite CX286914_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15295 contig Ccv1_Contig15295:618..1193. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286914 vs. ExPASy Swiss-Prot
Match: AB3C_ARATH (ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 43/52 (82.69%), Postives = 50/52 (96.15%), Query Frame = -2
Query:  420 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSSS 575
            AHRI+SVIDSDMVLLLS+G+IEEYD+P +LLE+KSSSFS+LVAEYT RSSSS
Sbjct: 1461 AHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSFSKLVAEYTSRSSSS 1512          
BLAST of CX286914 vs. ExPASy Swiss-Prot
Match: AB7C_ARATH (ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = -2
Query:  423 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSS 575
            AHRI+SVIDSDMVLLL  GLIEE+DSP +LLE+KSSSFS+LVAEYT  S S
Sbjct: 1433 AHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFSKLVAEYTASSDS 1483          
BLAST of CX286914 vs. ExPASy Swiss-Prot
Match: AB6C_ARATH (ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = -2
Query:  423 AHRITSVIDSDMVLLLSHGLIEEYDSPRKLLENKSSSFSQLVAEYTQRSSS 575
            AHRI+SVIDSDMVLLL  GLI+E+DSP +LLE++SS FS+ VAEYT  S S
Sbjct: 1411 AHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKFVAEYTTSSES 1461          
The following BLAST results are available for this feature:
BLAST of CX286914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AB3C_ARATH2.015e-1682.69ABC transporter C family member 3 OS=Arabidopsis t... [more]
AB7C_ARATH2.463e-1478.43ABC transporter C family member 7 OS=Arabidopsis t... [more]
AB6C_ARATH2.305e-1270.59ABC transporter C family member 6 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC01002E04Rv Veg1 Citrus clementina cDNA clone C01002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286914 ID=CX286914; Name=CX286914; organism=Citrus clementina; type=EST; length=576bp
GTTTTTTTTTTTTTTTTTTGAAAGTAATTTATTATTATTATTTTTTTAAA
CATGATAAACAATCCCTTGGATATTAGGATAGAGTGATGCTAAACTTTTC
AACGAATATTTTAACTTTTACAATCTTAAATAAAGTGACATTCGTTTATT
GGCCGAAGAGATTAAGCACTAAATAGCTCTAAACTTGCAATACTTTTGCG
GATGTTACCGGAAACTGCAATACGGTGGAAGGCAAATCTGTTCCTGTCTT
AAGAATGAACAAGGCAGGAGGGGCAGAGAGCCTCCGAACAAAAATTTATT
GTCTTGGATTGTCAGAGCCTCTTTCGGTGACCACTGGTGAATGAAATGCT
TCTCCTATTGTAAACATTTGATTCGGTTCAATTTCGTTTGTTAAGCTATG
GCCTTCAATTCCCAGCTAAACTGGAACTGGACCTCTGGGTGTACTCTGCA
ACAAGTTGTGAAAAAGAGGATGACTTGTTCTCTAGCAACTTTCTTGGGGA
ATCATATTCCTCGATGAGTCCATGACTGAGAAGCAGAACCATATCACTGT
CAATAACAGACGTTATCCGATGAGCA
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