CX286924

Overview
NameCX286924
Unique NameCX286924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10 contig Ccv1_Contig10:1..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286924 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.683e-86
Identity = 151/200 (75.50%), Postives = 175/200 (87.50%), Query Frame = 1
Query:    1 IPPSHALDLIRDRNLQMLTDSCLEGQFTDDDGTELVRLASRCLQYEPRERPNPKSLVTALSPLQKETEVPSHVLMGIPHSASVSPLSPLGEACSRRDLTAIHEILEKISYKDDEGVANELSFQMWTDQMQETLNSKKKGDVAFRQKDLKDAIECYTQFIDAGTMVSPTVYARRSLCYLMSDMPQDALNDAMQAQIISPIW 600
            IPPSHALDLIRDRN+QML DS LEGQF+ DDGTEL+RLASRCLQYEPRERPNPKSLV+A+ PLQK+ E+ SH L+G+P+SA+ + LSPLGEAC R DLTAIHEI+EK+ YKDDEG   ELSFQMWTDQMQ+TL  KKKGD AFR KD   AIECY+QFI+ GTM SPTV+AR+SLCYLM+DMP++ALN+AMQAQ+ISP W
Sbjct:  251 IPPSHALDLIRDRNIQMLMDSGLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQLLGVPNSATTTALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAW 450          
BLAST of CX286924 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 5.621e-68
Identity = 126/205 (61.46%), Postives = 158/205 (77.07%), Query Frame = 1
Query:    1 IPPSHALDLIRDRNLQMLTDSCLEGQFTDDDGTELVRLASRCLQYEPRERPNPKSLVTALSPLQKETEVPSHVLMGIPH-----SASVSPLSPLGEACSRRDLTAIHEILEKISYKDDEGVANELSFQMWTDQMQETLNSKKKGDVAFRQKDLKDAIECYTQFIDAGTMVSPTVYARRSLCYLMSDMPQDALNDAMQAQIISPIW 600
            IPPSHALD+IR +N+ +L DS LEG+F+ ++ T +V LAS+CLQYEPRERPN K LV  L+PLQ +++VPS+V++GI       S    PLSPLGEACSR DLTAIH+IL    Y+DDEG  NELSFQ WT QM++ L+++K+GD +FR+KD K AI+CY+QFID GTMVSPTV+ RRSLCYL+ D P  AL DAMQAQ + P W
Sbjct:  268 IPPSHALDMIRGKNIILLMDSHLEGKFSTEEATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGT-NELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDW 471          
BLAST of CX286924 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.661e-44
Identity = 92/204 (45.10%), Postives = 133/204 (65.20%), Query Frame = 1
Query:    1 IPPSHALDLIRDRNLQMLTDSCLEGQFTDDDGTELVRLASRCLQYEPRERPNPKSLVTALSPLQKETEVPSHVLMGIPH----SASVSPLSPLGEACSRRDLTAIHEILEKISYKDDEGVANELSFQMWTDQMQETLNSKKKGDVAFRQKDLKDAIECYTQFIDAGTMVSPTVYARRSLCYLMSDMPQDALNDAMQAQIISPIW 600
            IPPSHA ++I  +N+  L D  L+G+F+ D+   + +LAS+CL+YE +E PN K +V  L  LQ  TE PS+ ++ + +    ++S S LSPLGEAC R DL +IH IL    Y DD+ +  ELSF+ W  +++E  + ++ GD AF ++D K AI CY+QF++  ++V P+VYARRSL YL  D P+ AL D M AQ + P W
Sbjct:  229 IPPSHAPEMIHRKNVFKLMDPYLKGKFSIDEANVVYKLASQCLKYEGQESPNTKEIVATLETLQTRTEAPSYEVVEMTNQEKDASSSSNLSPLGEACLRMDLASIHSILVLAGYDDDKDII-ELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDW 431          
The following BLAST results are available for this feature:
BLAST of CX286924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y5126_ARATH2.683e-8675.50Probable serine/threonine-protein kinase At5g41260... [more]
Y4523_ARATH5.621e-6861.46Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH5.661e-4445.10Probable inactive receptor-like kinase SSP OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC01002F02Rv Veg1 Citrus clementina cDNA clone C01002F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286924 ID=CX286924; Name=CX286924; organism=Citrus clementina; type=EST; length=602bp
ATTCCCCCAAGCCATGCCCTCGATCTGATACGGGACAGAAATCTTCAGAT
GCTGACAGATTCCTGCTTGGAAGGACAATTTACTGATGATGATGGGACTG
AGTTAGTACGTTTGGCTTCTCGGTGTTTACAATATGAACCCCGAGAACGC
CCAAATCCAAAGTCATTAGTGACTGCTTTAAGTCCTCTTCAGAAAGAAAC
TGAGGTTCCTTCTCATGTCTTGATGGGTATTCCACACAGTGCTTCTGTCT
CTCCCCTGTCCCCACTTGGTGAAGCTTGTTCAAGAAGAGATTTGACTGCC
ATACACGAGATCTTGGAGAAAATAAGCTACAAAGATGATGAAGGAGTAGC
AAATGAGCTCTCCTTCCAAATGTGGACTGATCAAATGCAAGAAACATTAA
ATTCCAAGAAAAAGGGTGATGTTGCCTTCAGACAGAAAGATTTAAAAGAT
GCAATTGAGTGTTACACACAGTTCATTGATGCTGGAACCATGGTTTCACC
GACAGTTTACGCACGGCGTAGTTTGTGTTATCTCATGAGTGACATGCCTC
AAGACGCTCTGAATGATGCAATGCAAGCCCAAATCATTTCCCCCATCTGG
CA
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