CX286926

Overview
NameCX286926
Unique NameCX286926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:1103..1525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.391e-25
Identity = 55/71 (77.46%), Postives = 57/71 (80.28%), Query Frame = -3
Query:  209 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 421
            ADNELKGILSVCDEPLVS+DFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct:  331 ADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.098e-25
Identity = 55/71 (77.46%), Postives = 56/71 (78.87%), Query Frame = -3
Query:  209 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 421
            A+ ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  163 AEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.098e-25
Identity = 55/71 (77.46%), Postives = 56/71 (78.87%), Query Frame = -3
Query:  209 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 421
            A+ ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  326 AEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.284e-25
Identity = 55/71 (77.46%), Postives = 55/71 (77.46%), Query Frame = -3
Query:  209 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 421
            AD ELKGIL VCDEPLVSVDFRC             VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct:  322 ADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.425e-24
Identity = 54/71 (76.06%), Postives = 55/71 (77.46%), Query Frame = -3
Query:  209 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 421
            A  EL GILSVCDEPLVSVDFRC             VMGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  335 AAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.900e-23
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = -3
Query:  212 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 421
            AD  LKG+L+VCDEPLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct:  322 ADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.455e-22
Identity = 51/71 (71.83%), Postives = 52/71 (73.24%), Query Frame = -3
Query:  209 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 421
            A NEL GIL VCD PLVSVDFRC             VMGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct:  333 AANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 48/70 (68.57%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  212 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 421
            A+  LKGIL VCD PLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct:  353 AEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 47/70 (67.14%), Postives = 50/70 (71.43%), Query Frame = -3
Query:  212 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 421
            A   LKG+L VCD PLVSVDFRC             VMG DMVKV+AWYDNEWGYSQRVVDLAD+VAN W
Sbjct:  352 AAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 421          
BLAST of CX286926 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.759e-20
Identity = 46/70 (65.71%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  212 ADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 421
            A+  +KGIL VCD PLVSVDFRC             VMGDDMVKV+AWYDNEWGYSQRVVDLA +VA+ W
Sbjct:  349 ANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKW 418          
The following BLAST results are available for this feature:
BLAST of CX286926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
G3PA_SPIOL1.391e-2577.46Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL3.098e-2577.46Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH3.098e-2577.46Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC5.284e-2577.46Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA3.425e-2476.06Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC2.900e-2371.43Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_MAIZE2.455e-2271.83Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_PEA2.714e-2168.57Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL1.347e-2067.14Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH1.759e-2065.71Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC01002F04Rv Veg1 Citrus clementina cDNA clone C01002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286926 ID=CX286926; Name=CX286926; organism=Citrus clementina; type=EST; length=423bp
AGTCTCGAGTTTTTTTTTTTTTTTTTAATGTAAGAATTTTATTGCATAAT
GATTAATGACAGGCAAAGGAAAAAGGTTCCATAATAAGATAGTGTTATAC
ATTCTACAAATTCTAAGACGCAGAACAATAAATGGGGGAACCAAAAATGA
AAAACAAGAACATCGTTGTGCCGATTACAGCCGAGTTCCGATTTTAGTAT
TTACTTCACTTCCAGTTGTTGGCAACAATGTCGGCCAAATCCACAACCCT
TTGAGAGTAACCCCATTCATTGTCATACCATGCAATCACCTTAACCATGT
CGTCTCCCATGACAAGTGTGAGAGATGAATCAACGGTTGAGGATACATCA
GAGCACCTGAAGTCGACCGAAACGAGGGGCTCGTCGCACACGGAGAGGAT
CCCTTTCAGTTCATTGTCAGCGC
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