CX286934

Overview
NameCX286934
Unique NameCX286934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX286934_ssr466 microsatellite CX286934_ssr466:466..477. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX286934 vs. ExPASy Swiss-Prot
Match: NOP56_MOUSE (Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 3
Query:   15 GTRARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 224
            G  +RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  366 GRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAVVQAEEAAAEI 435          
BLAST of CX286934 vs. ExPASy Swiss-Prot
Match: NOP56_PONAB (Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 3
Query:   15 GTRARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 224
            G  +RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  366 GRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435          
BLAST of CX286934 vs. ExPASy Swiss-Prot
Match: NOP56_MACFA (Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 3
Query:   15 GTRARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 224
            G  +RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  366 GRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435          
BLAST of CX286934 vs. ExPASy Swiss-Prot
Match: NOP56_HUMAN (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 3
Query:   15 GTRARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 224
            G  +RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  366 GRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435          
BLAST of CX286934 vs. ExPASy Swiss-Prot
Match: NOP56_BOVIN (Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 3
Query:   15 GTRARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 224
            G  +RYLANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  366 GRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435          
BLAST of CX286934 vs. ExPASy Swiss-Prot
Match: YZVL_CAEEL (Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis elegans GN=K07C5.4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.911e-16
Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   15 GTRARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMK----AAIESTENNDTEMKEAATDTSGXXXXXXXXXXEIAVDGE-PMSADKVAATNGD 341
            G  +RYLANKCSIA+R+DCF+E   + +GE LR+QVE+RL+++  G  P+KNIDVMK    AA+E  E    + K+AA               E  VD + P    K  +  GD
Sbjct:  372 GRVSRYLANKCSIAARVDCFSETPVSTYGEFLRQQVEDRLEYFTSGTVPKKNIDVMKEAEEAAVEVKEKVIKKKKKAAKKAKRLAEESVTATAEAEVDEDAPKPKKKKKSKAGD 485          
BLAST of CX286934 vs. ExPASy Swiss-Prot
Match: NOP56_DICDI (Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:   15 GTRARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENN--DTEMKEAATDTS 248
            G  AR L+NK SIA+RIDCF++  T  FG  L++QV +R+ F++ GVAP++N+DVMK  IE  E +  + E+K    ++S
Sbjct:  364 GRIARCLSNKISIATRIDCFSDNPTAKFGVALKQQVADRIKFFNNGVAPKRNLDVMKEVIEEVEKDFAEEEVKPVVKESS 443          
BLAST of CX286934 vs. ExPASy Swiss-Prot
Match: NOP56_SCHPO (Nucleolar protein 56 OS=Schizosaccharomyces pombe GN=nop56 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 3
Query:   15 GTRARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIE 197
            G  +R+LANKCSIASRID F++  TT FG+ LR QVEERL+F+D GVAP +N   M  A E
Sbjct:  369 GRISRFLANKCSIASRIDNFSDAPTTAFGQVLRRQVEERLNFFDTGVAPTRNSIAMAEAYE 429          
The following BLAST results are available for this feature:
BLAST of CX286934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NOP56_MOUSE1.329e-1965.71Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1... [more]
NOP56_PONAB2.266e-1965.71Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2... [more]
NOP56_MACFA2.266e-1965.71Nucleolar protein 56 OS=Macaca fascicularis GN=NOP... [more]
NOP56_HUMAN2.266e-1965.71Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1... [more]
NOP56_BOVIN2.266e-1965.71Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 S... [more]
YZVL_CAEEL8.911e-1642.11Uncharacterized NOP5 family protein K07C5.4 OS=Cae... [more]
NOP56_DICDI1.858e-1346.25Nucleolar protein 56 OS=Dictyostelium discoideum G... [more]
NOP56_SCHPO5.406e-1360.66Nucleolar protein 56 OS=Schizosaccharomyces pombe ... [more]
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Properties
Property NameValue
Genbank descriptionC01002F12Rv Veg1 Citrus clementina cDNA clone C01002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286934 ID=CX286934; Name=CX286934; organism=Citrus clementina; type=EST; length=547bp
CTCGTGCCGAATTCGGCACGAGGGCTCGATACCTTGCAAACAAGTGTTCT
ATTGCATCTCGCATTGACTGTTTTGCAGAAAAAAACACTACCATTTTTGG
GGAGAAACTTCGTGAACAAGTTGAAGAGCGGCTGGACTTTTACGATAAGG
GAGTTGCACCTCGTAAAAACATTGATGTGATGAAAGCTGCAATTGAAAGC
ACTGAAAACAATGATACAGAGATGAAAGAAGCAGCAACAGATACTTCGGG
AAAGAAAAGCAAGAAAAAGAAATCGAAATCTGAGATTGCGGTGGATGGTG
AACCTATGTCTGCGGATAAAGTTGCTGCTACAAATGGAGATGCTTCAGAG
GAACCTAAATCCGAGAAAAGGAAGAAAAAGAAGGATAAGCGAAAATTAGA
TGAGGAGCCAGCAGAGGATTTGAATGGAGTCAGTGGTGTTGATGCTCATG
AAGATGGAACAGCCCAGAAGAAGAAGAAGCCGAAGAAGACGGCCGAGGAT
AACGACGAGGATGTGCAAGCCAAAAGCGAGAAAAAAAAAAAAAAAAA
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