CX286941

Overview
NameCX286941
Unique NameCX286941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX286941 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.271e-15
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = -2 
Query:  202 WKLDWNVQFLTVMYCGVLNSALVYYLQTWCISVKGPVFTAMFIPVQLVIVALFSIIAFAERLHLSSLIGTFFIVAGLYCVLWGKRKD 462
            WK+    +  T++Y G + S + + +Q WCI   GPVF A++ PVQ + VA+ + I   E+ +L  + G   I+ GLY VLWGK ++
Sbjct:  257 WKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEE 343
The following BLAST results are available for this feature:
BLAST of CX286941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA5.271e-1537.93Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC01002G10Rv Veg1 Citrus clementina cDNA clone C01002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286941 ID=CX286941; Name=CX286941; organism=Citrus clementina; type=EST; length=469bp
GAGTTTTTTTTTTTTTTTTTTCTGCAACCATTCTCATTCATCTTATTATT
TCTCATATAATCTAATCATCTATACATTAATGTGTACAGAGTGTGGACGT
AAAGGCCAAGTTTATTTAGTGGAAGTGGAAATCTCTAAGATTTTATCGTC
AGCAGTAGCCTTCATATTTCCGTCCTTGTGTTCATCATCAGCAGCAAGGC
TATCTTTTCTTTTGCCCCAAAGTACACAATAAAGCCCCGCAACAATGAAA
AATGTCCCTATCAAACTGCTCAAGTGAAGTCTCTCTGCAAAAGCAATAAT
GGAGAATAGAGCCACAATAACGAGCTGTACTGGAATGAACATTGCTGTAA
AAACTGGCCCTTTAACGCTAATGCACCATGTTTGTAGGTAATAGACTAAC
GCTGAGTTGAGTACACCGCAGTACATGACCGTAAGAAATTGTACGTTCCA
ATCCAACTTCCATATGGTA
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