CX286944

Overview
NameCX286944
Unique NameCX286944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6923 contig Ccv1_Contig6923:22..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286944 vs. ExPASy Swiss-Prot
Match: AROD1_ARATH (Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.006e-32
Identity = 67/101 (66.34%), Postives = 82/101 (81.19%), Query Frame = 1
Query:  274 RNLVSLPKPLTISV---TPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVESWLAEKAILPIENSSGESIHHNYDLLLRHRLHIVGEV 567
            R+L  LPKPLT +    +  D +KVRISF+G PG+++E AALKA+PNCET+PC++FE AF+AVE WL +KA+LPIENS G SIH NYDLLLRHRLHIV EV
Sbjct:   82 RDLSMLPKPLTANSLYSSDGDDSKVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVQEV 182          
BLAST of CX286944 vs. ExPASy Swiss-Prot
Match: AROD5_ARATH (Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.437e-30
Identity = 76/159 (47.80%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  103 WPDSGRSIASGVVFHGVRNSNGEPRKIFVSLGRFSGPADNHKTGKSSTGNDVPGKLCRNLVSLPKPLTI---SVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVESWLAEKAILPIENSSGESIHHNYDLLLRHRLHIVGEVQ 570
            W  S   +AS VV     NS+     + V  G  +G  D       S  N  PG        L +PLTI   S  P+ G+ +R++++G PG+++E AA KAYPN E IPCD+F+ AF+AVE W+A++A+LP+ENS G SIH NYDLLLRHRLHIVGEVQ
Sbjct:   59 WQSSCAILASKVV--SAENSSS----VAVVNGHSNGSVDLSLVPSKSQHNGKPG--------LIQPLTITDLSPAPSHGSTLRVAYQGVPGAYSEAAAGKAYPNSEAIPCDQFDVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQ 203          
BLAST of CX286944 vs. ExPASy Swiss-Prot
Match: AROD4_ARATH (Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.877e-30
Identity = 75/159 (47.17%), Postives = 99/159 (62.26%), Query Frame = 1
Query:  103 WPDSGRSIASGVVFHGVRNSNGEPRKIFVSLGRFSGPADNHKTGKSSTGNDVPGKLCRNLVSLPKPLTI---SVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVESWLAEKAILPIENSSGESIHHNYDLLLRHRLHIVGEVQ 570
            W  S   ++S V    V N+ G   KI    G  +G  +       ST     GKL        +PLTI   S  P  G+ +R++++G PG+++E AA KAYPNC+ IPCD+F+ AF+AVE W+A++A+LP+ENS G SIH NYDLLLRHRLHIVGEVQ
Sbjct:   55 WQSSCAILSSKVA--SVENTGGLADKIAAVNGHTNGSVNLGLVAVESTN----GKLAP-----AQPLTITDLSPAPLHGSSLRVAYQGVPGAYSEAAAGKAYPNCDAIPCDQFDVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQ 202          
BLAST of CX286944 vs. ExPASy Swiss-Prot
Match: AROD6_ARATH (Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 71/141 (50.35%), Postives = 92/141 (65.25%), Query Frame = 1
Query:  205 SGPADNHKTGKSSTGNDVPGKLCRNLVSLPK----------------PLT---ISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVESWLAEKAILPIENSSGESIHHNYDLLLRHRLHIVGEVQ 570
            SG  D H  G +S    VPG    NLV + K                PL+   +S  P  G+ +R++++G PG+++E AA KAYPNC+ IPCD+FE AF+AVE W+A++A+LP+ENS G SIH NYDLLLRHRLHIVGEVQ
Sbjct:   57 SGGVD-HLNGHNSAAARVPGM---NLVPIEKSDSNPLVPQHRHNPLKPLSMTDLSPAPMHGSNLRVAYQGVPGAYSEAAAGKAYPNCQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQ 193          
BLAST of CX286944 vs. ExPASy Swiss-Prot
Match: AROD3_ARATH (Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.133e-30
Identity = 60/95 (63.16%), Postives = 78/95 (82.11%), Query Frame = 1
Query:  295 KPLTIS---VTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVESWLAEKAILPIENSSGESIHHNYDLLLRHRLHIVGEVQ 570
            KPL+IS     P  G+ +R++++G PG+++E AA KAYPNC+ IPCD+FE AF+AVE W+A++A+LP+ENS G SIH NYDLLLRHRLHIVGEVQ
Sbjct:  104 KPLSISDLSPAPMHGSNLRVAYQGVPGAYSEAAAGKAYPNCQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQ 198          
BLAST of CX286944 vs. ExPASy Swiss-Prot
Match: AROD2_ARATH (Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.038e-29
Identity = 57/97 (58.76%), Postives = 80/97 (82.47%), Query Frame = 1
Query:  289 LPKPLT---ISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVESWLAEKAILPIENSSGESIHHNYDLLLRHRLHIVGEVQ 570
            LPKPL+   ++ + ++G++VR++++G  G+++E AA KAYPNCE +PC+EF+ AF+AVE WL ++A+LPIENS G SIH NYDLLLRH LHIVGEV+
Sbjct:   80 LPKPLSSNQLTESVSNGSRVRVAYQGVRGAYSESAAEKAYPNCEAVPCEEFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHNLHIVGEVK 176          
The following BLAST results are available for this feature:
BLAST of CX286944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AROD1_ARATH2.006e-3266.34Arogenate dehydratase/prephenate dehydratase 1, ch... [more]
AROD5_ARATH1.437e-3047.80Arogenate dehydratase 5, chloroplastic OS=Arabidop... [more]
AROD4_ARATH1.877e-3047.17Arogenate dehydratase 4, chloroplastic OS=Arabidop... [more]
AROD6_ARATH5.462e-3050.35Arogenate dehydratase/prephenate dehydratase 6, ch... [more]
AROD3_ARATH7.133e-3063.16Arogenate dehydratase 3, chloroplastic OS=Arabidop... [more]
AROD2_ARATH6.038e-2958.76Arogenate dehydratase/prephenate dehydratase 2, ch... [more]
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Properties
Property NameValue
Genbank descriptionC01002H01Rv Veg1 Citrus clementina cDNA clone C01002H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286944 ID=CX286944; Name=CX286944; organism=Citrus clementina; type=EST; length=574bp
CTAAACTTCTTTCAAACACAACTTTCAAGTGCTCCTCGTTTCAAGGGAAC
ATTTTAACGCATTTTGAGTGTAATGGCTTTGAAGTGTGTGGCTGTCATGG
GCTGGCCAGATTCTGGCCGGTCGATTGCATCTGGTGTTGTATTTCATGGG
GTCCGGAATTCGAATGGGGAGCCGCGTAAAATATTTGTCAGTCTTGGCCG
GTTCTCGGGTCCGGCTGACAATCACAAGACAGGAAAATCATCAACTGGAA
ACGATGTTCCTGGGAAATTGTGCAGGAATTTGGTCTCCCTTCCAAAACCT
TTAACTATATCTGTGACTCCCAATGATGGTACCAAGGTGCGAATTTCTTT
TAAGGGGTCACCTGGCTCATTTACTGAAGATGCTGCACTCAAAGCCTACC
CAAATTGTGAAACTATACCCTGTGATGAGTTTGAAGAAGCTTTTAAGGCT
GTTGAATCGTGGCTTGCTGAGAAAGCCATTCTTCCAATTGAGAATTCTTC
AGGTGAAAGTATTCATCATAACTATGACTTGCTTCTTCGTCATAGACTTC
ACATTGTGGGTGAGGTGCAGTTTG
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