CX286948

Overview
NameCX286948
Unique NameCX286948
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length521
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11449 contig Ccv1_Contig11449:41..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX286948 vs. ExPASy Swiss-Prot
Match: Y5957_ARATH (Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.978e-30
Identity = 80/164 (48.78%), Postives = 94/164 (57.32%), Query Frame = 2 
Query:   80 ITLTYGRPLPPSDETCYPSSSASDGDFDYARPKFSSHSEPSAYADEALNNEYSSYARPKXXXXXXXXXXXXXXXXXXXXXXXAYGFQPGMGRPEPYGSGRPESEYASG--------YAKRPDSQEYGSGYGKRPESE-EYGSG--------YGRKPDSEVHGSG 520
            IT+ YGRP+PPSDETCYP SS  D DF+Y RP+F+   EPSAY DEALN EYSSY+RPK                        YG + G GR       +PESEY SG        Y +RP+ Q YGSGYG R E+E EYGSG        YGR+P+S + GSG
Sbjct:   28 ITVIYGRPIPPSDETCYPLSSGVDDDFEYERPEFTQIHEPSAYGDEALNTEYSSYSRPK-PRPAFRPDSGGGGHVQGERPNPGYGSESGYGR-------KPESEYGSGYGGQTEVEYGRRPE-QSYGSGYGGRTETESEYGSGGGGRTEVEYGRRPESGL-GSG 181
The following BLAST results are available for this feature:
BLAST of CX286948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5957_ARATH1.978e-3048.78Uncharacterized protein At5g39570 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC01002H06Rv Veg1 Citrus clementina cDNA clone C01002H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286948 ID=CX286948; Name=CX286948; organism=Citrus clementina; type=EST; length=521bp
GCCGTACTACGCTGACAATGACGATGACGTTACTGATTTCGACGATTACG
ATCCAACACCCTACGATGGTGGATACGACATCACTTTGACTTACGGCCGT
CCTCTGCCACCGTCCGATGAGACTTGTTACCCATCATCGTCGGCGTCAGA
TGGTGACTTCGACTACGCTCGTCCCAAGTTCTCGTCGCACTCGGAGCCTT
CAGCCTACGCTGACGAAGCTCTCAATAACGAGTACAGCTCCTACGCCCGA
CCAAAGCCTCGTCCCGGTTTCGTACCCGGGTCAGGGGGTGGGTCGGGTTA
TGGAGGAAGGCCCCAGCCGCAGCCGGCTTATGGGTTTCAGCCTGGAATGG
GAAGGCCCGAACCTTATGGGTCGGGGAGGCCCGAATCTGAATATGCTTCT
GGGTATGCGAAGAGGCCTGATTCGCAGGAATATGGATCTGGGTACGGAAA
GAGACCCGAGTCGGAGGAATATGGATCTGGGTACGGCAGGAAACCTGATT
CCGAGGTGCATGGCTCTGGAT
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