CX286955

Overview
NameCX286955
Unique NameCX286955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig742 contig Ccv1_Contig742:111..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.025e-55
Identity = 105/128 (82.03%), Postives = 115/128 (89.84%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 384
            ALKGALDGGLDIPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMEDEPEKYQSHF EYIK+GIEAD LE LYKKVHAAIRA+P  KKS+K  P  HKRYNLKKLTY+ERKARLVERL ALN
Sbjct:  161 ALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEADELEGLYKKVHAAIRANPIAKKSDKPQPKAHKRYNLKKLTYDERKARLVERLNALN 288          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.598e-54
Identity = 98/128 (76.56%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 384
            ALKGALDGGLDIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  162 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.254e-53
Identity = 98/128 (76.56%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 384
            ALKGALDGGLDIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  162 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.254e-53
Identity = 98/128 (76.56%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 384
            ALKGALDGGLDIPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+EPEK+Q+HF EY+K+GI+AD +E LYKKVHAAIRADP   KS KK PA HKRYNLKKLTYE+RKA LVERL ALN
Sbjct:  162 ALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALN 289          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 3.647e-53
Identity = 96/128 (75.00%), Postives = 114/128 (89.06%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 384
            ALKGALDGGLDIPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EE+YKKVHAAIRA+PN KK+EK  P EHKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  161 ALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 1.810e-52
Identity = 96/128 (75.00%), Postives = 113/128 (88.28%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 384
            ALKGALDGGLDIPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDEPEK Q+HF  YIK+G+EA+++EELYKKVHAAIRADPN KK+ K  P +HKRYNLKKLTYEERK +L+ER+KALN
Sbjct:  161 ALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALN 288          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.895e-44
Identity = 84/106 (79.25%), Postives = 92/106 (86.79%), Query Frame = 1
Query:   67 SKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKALN 384
            SKDSKQLDAEVHRKYIY GHVAAYM  LMEDEPEKYQSHF  YIK  +  DN+EE+YKKVHAAIR DP+ KKS+K+PP  HKRYNLKKLTYEERKA+L+ERL ALN
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALN 107          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.210e-33
Identity = 68/126 (53.97%), Postives = 92/126 (73.02%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPAEHKRYNLKKLTYEERKARLVERLKA 378
            A+KGA+DGGL+IPHS KRF G+  +SK  +A+VHR++I+  H+A YM+TL E+EPE +Q  F +YIK GI AD +EE+YKK H AIRADP++ +  K      KR+N  KLT  ERK R V+++KA
Sbjct:  162 AMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADGIEEMYKKAHEAIRADPDRAEIVKTKEPVKKRWNRAKLTLSERKDR-VKQIKA 286          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL5_BOMMO (60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.300e-31
Identity = 64/124 (51.61%), Postives = 91/124 (73.39%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSE-KKPPAEHKRYNLKKLTYEERKARLVER 369
            A+KGA+DGGL++PHS KRF G+  +SK+ +AEVHR +I+  HVA YMR+L +D+ + ++  F +YIK G+ AD +E +YKK H AIRADP+ KK E KK   + KR+N +KLT  ERK R+ ++
Sbjct:  162 AMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285          
BLAST of CX286955 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 6.693e-31
Identity = 65/121 (53.72%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 ALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDEPEKYQSHFCEYIKRGIEADNLEELYKKVHAAIRADPNQKKSEKKPPA-EHKRYNLKKLTYEERKARL 360
            A+KGA+DGGL+IPHS KRF G+S ++K  +A+VHR +I+  HVA YMR+L E++ E ++  F  YIK GI AD+LE++YKK H AIR DP  K + KK  A   KR+N KKLT E+RK ++
Sbjct:  162 AMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDLEDIYKKAHQAIRNDPTHKVTAKKSSAVTKKRWNAKKLTNEQRKTKI 282          
The following BLAST results are available for this feature:
BLAST of CX286955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL5_CUCSA1.025e-5582.0360S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ORYSJ9.598e-5476.5660S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ1.254e-5376.5660S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI1.254e-5376.5660S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ARATH3.647e-5375.0060S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH1.810e-5275.0060S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL5_SOLME6.895e-4479.2560S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_LYSTE3.210e-3353.9760S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_BOMMO2.300e-3151.6160S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE... [more]
RL5_DROME6.693e-3153.7260S ribosomal protein L5 OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionC01003A01SK Veg1 Citrus clementina cDNA clone C01003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX286955 ID=CX286955; Name=CX286955; organism=Citrus clementina; type=EST; length=582bp
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGATGAGCCAGAGAAGTACCAGTCTCACTTTTGTGAATACATCAA
GAGAGGTATTGAGGCTGATAACCTTGAAGAGTTGTACAAGAAGGTACATG
CTGCCATCCGTGCAGACCCTAACCAGAAGAAATCTGAGAAGAAGCCTCCA
GCAGAGCACAAGAGGTACAACCTGAAGAAACTGACGTACGAGGAAAGGAA
AGCCAGGTTAGTTGAAAGGTTGAAAGCACTCAATGCTGCTGAAGACGATG
AAGCCGATGAGTGAATGCGATACTAGGAAGTTTTTGTTTCTTAGTTCAAT
AGGTTATTTTCAGAGATTACTAAAATTAAAGAACCTGGCTTGTTTGATAG
GTTGAGAACAGTGTTGTTTCTATGAGCTTTCAAATGCTGATGAGACCTGG
TTGTTTGCTGAAAAAAAAAAAAAAAAAAAAAA
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